LINC01742

Summary

LINC01742 (long intergenic non-protein coding RNA 1742, HGNC:52530) is a long non-coding RNA gene on chromosome 20q13.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52530
Approved symbol	LINC01742
Name	long intergenic non-protein coding RNA 1742
Location	20q13.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000275852
Ensembl biotype	lncRNA
Entrez	105376992
RNAcentral	URS0000767F6C — lncRNA, 628 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000616333, ENST00000836927

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000616333 — 2 exons

Exon	Start	End
ENSE00004256889	58003826	58004067
ENSE00004256890	58004185	58004648

Expression profiles

Bgee: expression breadth broad, 47 present calls, max score 87.37.

Top tissues by expression

47 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.37	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.96	gold quality
left testis	UBERON:0004533	59.09	gold quality
testis	UBERON:0000473	58.99	gold quality
right testis	UBERON:0004534	57.68	gold quality
calcaneal tendon	UBERON:0003701	51.71	silver quality
islet of Langerhans	UBERON:0000006	51.64	gold quality
descending thoracic aorta	UBERON:0002345	50.83	gold quality
multicellular organism	UBERON:0000468	50.71	gold quality
gastrocnemius	UBERON:0001388	48.04	gold quality
blood	UBERON:0000178	46.77	silver quality
tibial artery	UBERON:0007610	46.47	gold quality
popliteal artery	UBERON:0002250	46.29	gold quality
ascending aorta	UBERON:0001496	46.16	gold quality
thoracic aorta	UBERON:0001515	45.93	gold quality
putamen	UBERON:0001874	45.60	gold quality
tibial nerve	UBERON:0001323	45.10	gold quality
prostate gland	UBERON:0002367	45.06	gold quality
body of pancreas	UBERON:0001150	43.84	silver quality
omental fat pad	UBERON:0010414	43.82	gold quality
small intestine Peyer’s patch	UBERON:0003454	42.93	gold quality
left coronary artery	UBERON:0001626	42.83	gold quality
subcutaneous adipose tissue	UBERON:0002190	42.12	silver quality
nucleus accumbens	UBERON:0001882	42.07	gold quality
lower esophagus muscularis layer	UBERON:0035833	41.51	silver quality
esophagus mucosa	UBERON:0002469	41.16	silver quality
thoracic mammary gland	UBERON:0005200	41.12	silver quality
skin of leg	UBERON:0001511	40.86	gold quality
left ovary	UBERON:0002119	40.37	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	40.29	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.