LINC01747

Summary

LINC01747 (long intergenic non-protein coding RNA 1747, HGNC:52536) is a long non-coding RNA gene on chromosome 20p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52536
Approved symbol	LINC01747
Name	long intergenic non-protein coding RNA 1747
Location	20p11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230400
Ensembl biotype	lncRNA
Entrez	105372566
RNAcentral	URS0000BC445A — lncRNA, 2617 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000437696, ENST00000441568, ENST00000634603, ENST00000653432, ENST00000658267, ENST00000667287, ENST00000785670, ENST00000785671

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437696 — 3 exons

Exon	Start	End
ENSE00001707215	22685116	22685344
ENSE00001729398	22684745	22684848
ENSE00004161694	22683160	22683893

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 88.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0115 / max 15.3369, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186646	0.0115	3

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.62	gold quality
right testis	UBERON:0004534	63.64	gold quality
testis	UBERON:0000473	62.33	gold quality
left testis	UBERON:0004533	62.12	gold quality
ganglionic eminence	UBERON:0004023	61.37	gold quality
calcaneal tendon	UBERON:0003701	60.03	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.18	gold quality
bone marrow	UBERON:0002371	54.15	gold quality
monocyte	CL:0000576	53.01	gold quality
prefrontal cortex	UBERON:0000451	51.79	silver quality
blood	UBERON:0000178	51.37	gold quality
left coronary artery	UBERON:0001626	49.79	gold quality
lymph node	UBERON:0000029	49.60	silver quality
urinary bladder	UBERON:0001255	49.31	gold quality
vermiform appendix	UBERON:0001154	48.66	gold quality
right uterine tube	UBERON:0001302	48.59	gold quality
right lobe of liver	UBERON:0001114	48.13	silver quality
liver	UBERON:0002107	47.46	silver quality
placenta	UBERON:0001987	47.19	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.10	gold quality
primary visual cortex	UBERON:0002436	47.08	silver quality
muscle of leg	UBERON:0001383	46.98	gold quality
islet of Langerhans	UBERON:0000006	46.13	silver quality
endometrium	UBERON:0001295	45.93	gold quality
frontal cortex	UBERON:0001870	45.79	silver quality
multicellular organism	UBERON:0000468	45.63	gold quality
corpus callosum	UBERON:0002336	45.33	silver quality
heart	UBERON:0000948	45.20	silver quality
gastrocnemius	UBERON:0001388	45.13	gold quality
heart left ventricle	UBERON:0002084	44.81	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.