LINC01762

Summary

LINC01762 (long intergenic non-protein coding RNA 1762, HGNC:52552) is a long non-coding RNA gene on chromosome 1p13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52552
Approved symbol	LINC01762
Name	long intergenic non-protein coding RNA 1762
Location	1p13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233154
Ensembl biotype	lncRNA
Entrez	101929023
RNAcentral	URS00007E4219 — lncRNA, 472 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000423907, ENST00000430107, ENST00000430316, ENST00000434879, ENST00000437308, ENST00000443219, ENST00000449303, ENST00000668577, ENST00000718348

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423907 — 4 exons

Exon	Start	End
ENSE00001716889	116428382	116428494
ENSE00001749148	116478781	116478808
ENSE00001781267	116478052	116478172
ENSE00004034844	116423724	116423915

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 93.75.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0284 / max 17.8962, expressed in 7 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
14006	0.0197	6
14005	0.0057	2
14007	0.0031	2

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	93.75	silver quality
cerebellar vermis	UBERON:0004720	87.85	gold quality
adult mammalian kidney	UBERON:0000082	87.41	gold quality
quadriceps femoris	UBERON:0001377	86.35	gold quality
metanephros cortex	UBERON:0010533	84.61	gold quality
kidney	UBERON:0002113	84.08	gold quality
cortex of kidney	UBERON:0001225	80.50	gold quality
blood	UBERON:0000178	72.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.68	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.08	gold quality
bone marrow cell	CL:0002092	65.46	silver quality
apex of heart	UBERON:0002098	65.19	gold quality
ventricular zone	UBERON:0003053	64.67	gold quality
monocyte	CL:0000576	64.29	gold quality
leukocyte	CL:0000738	63.85	gold quality
right lung	UBERON:0002167	63.56	gold quality
cortical plate	UBERON:0005343	63.29	gold quality
skeletal muscle tissue	UBERON:0001134	62.33	silver quality
heart left ventricle	UBERON:0002084	61.86	gold quality
skin of leg	UBERON:0001511	61.61	gold quality
gall bladder	UBERON:0002110	61.38	gold quality
zone of skin	UBERON:0000014	61.12	gold quality
ganglionic eminence	UBERON:0004023	61.09	gold quality
right coronary artery	UBERON:0001625	61.02	gold quality
spleen	UBERON:0002106	60.95	gold quality
colonic epithelium	UBERON:0000397	60.46	silver quality
skin of abdomen	UBERON:0001416	60.22	gold quality
lymph node	UBERON:0000029	60.03	gold quality
mucosa of transverse colon	UBERON:0004991	59.95	gold quality
heart	UBERON:0000948	59.89	gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	62.70
E-GEOD-131882	no	1322.29
E-ANND-3	no	2.85

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.