LINC01778

Summary

LINC01778 (long intergenic non-protein coding RNA 1778, HGNC:52568) is a long non-coding RNA gene on chromosome 1p35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52568
Approved symbol	LINC01778
Name	long intergenic non-protein coding RNA 1778
Location	1p35.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223382
Ensembl biotype	lncRNA
Entrez	105378622
RNAcentral	URS0000BC4406 — lncRNA, 1044 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000430320, ENST00000438790, ENST00000634319, ENST00000634587, ENST00000634980, ENST00000635009, ENST00000635044, ENST00000635288, ENST00000635357, ENST00000658212, ENST00000659416, ENST00000659931, ENST00000667276, ENST00000671661, ENST00000692012, ENST00000722254, ENST00000722255, ENST00000722256, ENST00000722257, ENST00000722258, ENST00000722259, ENST00000722260, ENST00000722261, ENST00000722262, ENST00000722263, ENST00000722264, ENST00000722265, ENST00000722266, ENST00000722267, ENST00000722268, ENST00000722269

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430320 — 4 exons

Exon	Start	End
ENSE00001622461	30826605	30826652
ENSE00001707968	30829748	30829882
ENSE00004042716	30824109	30824373
ENSE00004042750	30833506	30834448

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 75.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3209 / max 6.2087, expressed in 165 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
1878	0.3209	165

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right adrenal gland cortex	UBERON:0035827	75.99	gold quality
right adrenal gland	UBERON:0001233	75.30	gold quality
left adrenal gland	UBERON:0001234	73.86	gold quality
left adrenal gland cortex	UBERON:0035825	73.50	gold quality
adrenal gland	UBERON:0002369	73.18	gold quality
smooth muscle tissue	UBERON:0001135	67.16	gold quality
muscle layer of sigmoid colon	UBERON:0035805	64.97	gold quality
muscle tissue	UBERON:0002385	64.82	gold quality
sural nerve	UBERON:0015488	64.71	silver quality
ventricular zone	UBERON:0003053	63.04	gold quality
adrenal tissue	UBERON:0018303	61.71	gold quality
myometrium	UBERON:0001296	61.68	gold quality
cortical plate	UBERON:0005343	61.62	gold quality
ganglionic eminence	UBERON:0004023	60.91	gold quality
body of uterus	UBERON:0009853	60.66	gold quality
skeletal muscle tissue	UBERON:0001134	60.05	gold quality
colon	UBERON:0001155	58.88	gold quality
stromal cell of endometrium	CL:0002255	58.82	gold quality
left uterine tube	UBERON:0001303	58.61	gold quality
duodenum	UBERON:0002114	58.41	gold quality
prefrontal cortex	UBERON:0000451	57.75	gold quality
intestine	UBERON:0000160	57.23	gold quality
urinary bladder	UBERON:0001255	57.16	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.07	gold quality
lower esophagus	UBERON:0013473	57.06	gold quality
gall bladder	UBERON:0002110	56.61	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.57	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	55.53	gold quality
fundus of stomach	UBERON:0001160	54.46	gold quality
substantia nigra	UBERON:0002038	54.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.