LINC01779

Summary

LINC01779 (long intergenic non-protein coding RNA 1779, HGNC:52569) is a long non-coding RNA gene on chromosome 1p13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52569
Approved symbol	LINC01779
Name	long intergenic non-protein coding RNA 1779
Location	1p13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235933
Ensembl biotype	lncRNA
Entrez	107985190
RNAcentral	URS00026A21EE — lncRNA, 1828 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000426515, ENST00000849284

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426515 — 2 exons

Exon	Start	End
ENSE00001760835	116165388	116167494
ENSE00004279613	116164200	116164343

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 54.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0257 / max 2.6861, expressed in 13 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
4810	0.0257	13

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
duodenum	UBERON:0002114	54.94	gold quality
vermiform appendix	UBERON:0001154	54.87	gold quality
skeletal muscle tissue	UBERON:0001134	54.47	gold quality
endometrium	UBERON:0001295	54.47	gold quality
prefrontal cortex	UBERON:0000451	54.08	gold quality
lymph node	UBERON:0000029	51.16	gold quality
blood	UBERON:0000178	50.81	silver quality
superior frontal gyrus	UBERON:0002661	50.80	gold quality
monocyte	CL:0000576	50.04	silver quality
islet of Langerhans	UBERON:0000006	49.87	gold quality
frontal cortex	UBERON:0001870	48.97	gold quality
pancreas	UBERON:0001264	48.64	gold quality
smooth muscle tissue	UBERON:0001135	48.30	gold quality
muscle of leg	UBERON:0001383	47.92	silver quality
tibial artery	UBERON:0007610	47.08	gold quality
gastrocnemius	UBERON:0001388	46.99	silver quality
adrenal gland	UBERON:0002369	46.90	gold quality
right coronary artery	UBERON:0001625	46.67	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.61	gold quality
heart left ventricle	UBERON:0002084	46.59	gold quality
cerebral cortex	UBERON:0000956	46.55	gold quality
gall bladder	UBERON:0002110	46.13	gold quality
mucosa of stomach	UBERON:0001199	45.79	gold quality
left adrenal gland cortex	UBERON:0035825	45.70	gold quality
left ovary	UBERON:0002119	45.68	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.58	gold quality
heart	UBERON:0000948	45.07	gold quality
left adrenal gland	UBERON:0001234	45.04	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	44.90	gold quality
lower esophagus muscularis layer	UBERON:0035833	44.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.