LINC01780

Summary

LINC01780 (long intergenic non-protein coding RNA 1780, HGNC:52570) is a long non-coding RNA gene on chromosome 1p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52570
Approved symbol	LINC01780
Name	long intergenic non-protein coding RNA 1780
Location	1p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232650
Ensembl biotype	lncRNA
Entrez	105378934
RNAcentral	URS000033BA26 — lncRNA, 391 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000420059, ENST00000457683

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420059 — 3 exons

Exon	Start	End
ENSE00001662520	119330532	119330815
ENSE00001700284	119328744	119328789
ENSE00001770908	119327399	119328287

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 71.99.

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	71.99	gold quality
liver	UBERON:0002107	71.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.20	gold quality
muscle tissue	UBERON:0002385	67.77	gold quality
monocyte	CL:0000576	64.48	gold quality
ventricular zone	UBERON:0003053	64.40	gold quality
adult mammalian kidney	UBERON:0000082	62.96	gold quality
kidney	UBERON:0002113	61.35	gold quality
right lung	UBERON:0002167	59.76	gold quality
ganglionic eminence	UBERON:0004023	59.50	gold quality
lymph node	UBERON:0000029	57.70	gold quality
cortex of kidney	UBERON:0001225	57.53	gold quality
minor salivary gland	UBERON:0001830	55.12	gold quality
urinary bladder	UBERON:0001255	54.28	gold quality
islet of Langerhans	UBERON:0000006	53.41	gold quality
blood	UBERON:0000178	53.38	gold quality
gastrocnemius	UBERON:0001388	52.82	gold quality
muscle of leg	UBERON:0001383	52.76	gold quality
metanephros cortex	UBERON:0010533	52.56	gold quality
vermiform appendix	UBERON:0001154	52.36	gold quality
right adrenal gland cortex	UBERON:0035827	52.15	gold quality
placenta	UBERON:0001987	51.73	gold quality
adrenal gland	UBERON:0002369	50.97	gold quality
right adrenal gland	UBERON:0001233	50.67	gold quality
left adrenal gland	UBERON:0001234	50.67	gold quality
prefrontal cortex	UBERON:0000451	50.55	gold quality
small intestine	UBERON:0002108	49.73	gold quality
endometrium	UBERON:0001295	49.58	silver quality
small intestine Peyer’s patch	UBERON:0003454	49.55	gold quality
lower esophagus mucosa	UBERON:0035834	48.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.