LINC01781

Summary

LINC01781 (long intergenic non-protein coding RNA 1781, HGNC:52571) is a long non-coding RNA gene on chromosome 1p31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52571
Approved symbol	LINC01781
Name	long intergenic non-protein coding RNA 1781
Location	1p31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234184
Ensembl biotype	lncRNA
Entrez	101927412
RNAcentral	URS00003FAC40 — lncRNA, 591 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000418041, ENST00000443104, ENST00000443565, ENST00000659969, ENST00000686004, ENST00000785966, ENST00000785967, ENST00000785968, ENST00000785969, ENST00000785970

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418041 — 3 exons

Exon	Start	End
ENSE00001441262	80644225	80644353
ENSE00001746225	80535755	80535942
ENSE00001773109	80646563	80646788

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 92.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.5093 / max 245.9095, expressed in 80 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
3697	1.3687	54
3692	0.1166	22
3691	0.0240	12

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
spleen	UBERON:0002106	92.24	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.05	gold quality
lymph node	UBERON:0000029	82.32	gold quality
bone marrow cell	CL:0002092	78.93	gold quality
small intestine Peyer’s patch	UBERON:0003454	77.97	gold quality
small intestine	UBERON:0002108	76.76	gold quality
tonsil	UBERON:0002372	76.69	gold quality
vermiform appendix	UBERON:0001154	75.83	gold quality
adult mammalian kidney	UBERON:0000082	75.04	gold quality
kidney	UBERON:0002113	74.37	gold quality
bone marrow	UBERON:0002371	73.76	gold quality
mucosa of transverse colon	UBERON:0004991	73.59	gold quality
urinary bladder	UBERON:0001255	70.52	gold quality
quadriceps femoris	UBERON:0001377	69.42	gold quality
blood	UBERON:0000178	69.21	gold quality
rectum	UBERON:0001052	68.38	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
cortex of kidney	UBERON:0001225	66.73	gold quality
thymus	UBERON:0002370	65.07	silver quality
muscle tissue	UBERON:0002385	64.90	gold quality
metanephros cortex	UBERON:0010533	64.73	gold quality
leukocyte	CL:0000738	64.72	gold quality
intestine	UBERON:0000160	64.27	gold quality
duodenum	UBERON:0002114	63.54	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.26	gold quality
skeletal muscle tissue	UBERON:0001134	63.08	silver quality
monocyte	CL:0000576	62.95	gold quality
granulocyte	CL:0000094	62.25	gold quality
gall bladder	UBERON:0002110	61.56	gold quality
islet of Langerhans	UBERON:0000006	59.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	24.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.