LINC01785

Summary

LINC01785 (long intergenic non-protein coding RNA 1785, HGNC:25060) is a long non-coding RNA gene on chromosome 19p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:25060
Approved symbol	LINC01785
Name	long intergenic non-protein coding RNA 1785
Location	19p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000268038
Ensembl biotype	lncRNA
Entrez	374890
RNAcentral	URS000031C533 — lncRNA, 1112 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000598042, ENST00000652384, ENST00000659982, ENST00000660422, ENST00000663718, ENST00000693145, ENST00000809960

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000598042 — 2 exons

Exon	Start	End
ENSE00003155224	22623857	22623971
ENSE00003208063	22615557	22616553

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 97.19.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0995 / max 9.0242, expressed in 43 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
180254	0.0995	43

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	97.19	gold quality
caudate nucleus	UBERON:0001873	75.74	gold quality
right frontal lobe	UBERON:0002810	74.16	gold quality
putamen	UBERON:0001874	73.35	gold quality
anterior cingulate cortex	UBERON:0009835	73.21	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	73.12	gold quality
Brodmann (1909) area 9	UBERON:0013540	70.78	gold quality
cerebral cortex	UBERON:0000956	69.59	gold quality
primary visual cortex	UBERON:0002436	69.57	gold quality
frontal cortex	UBERON:0001870	69.43	gold quality
superior frontal gyrus	UBERON:0002661	67.52	gold quality
prefrontal cortex	UBERON:0000451	66.47	gold quality
granulocyte	CL:0000094	64.49	gold quality
brain	UBERON:0000955	64.43	gold quality
nucleus accumbens	UBERON:0001882	62.29	gold quality
lymph node	UBERON:0000029	60.43	gold quality
Ammon’s horn	UBERON:0001954	59.92	gold quality
tonsil	UBERON:0002372	59.36	gold quality
amygdala	UBERON:0001876	58.71	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.28	gold quality
leukocyte	CL:0000738	57.82	gold quality
gall bladder	UBERON:0002110	57.70	gold quality
monocyte	CL:0000576	57.52	gold quality
left ovary	UBERON:0002119	56.98	gold quality
duodenum	UBERON:0002114	56.78	gold quality
ovary	UBERON:0000992	56.54	gold quality
rectum	UBERON:0001052	55.71	gold quality
vermiform appendix	UBERON:0001154	55.53	gold quality
substantia nigra	UBERON:0002038	54.91	gold quality
cortex of kidney	UBERON:0001225	54.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.