LINC01788

Summary

LINC01788 (long intergenic non-protein coding RNA 1788, HGNC:52577) is a long non-coding RNA gene on chromosome 1p31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52577
Approved symbol	LINC01788
Name	long intergenic non-protein coding RNA 1788
Location	1p31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229051
Ensembl biotype	lncRNA
Entrez	101927244
RNAcentral	URS00007E4B60 — lncRNA, 2101 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000419450, ENST00000660283, ENST00000663421, ENST00000664802

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419450 — 7 exons

Exon	Start	End
ENSE00001627283	70785186	70786468
ENSE00001643558	70712057	70712131
ENSE00001678037	70777530	70777695
ENSE00001725143	70707728	70707981
ENSE00001727744	70713129	70713307
ENSE00001769452	70706453	70706531
ENSE00001796933	70708721	70708770

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 69.68.

Top tissues by expression

189 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adult mammalian kidney	UBERON:0000082	69.68	gold quality
kidney	UBERON:0002113	63.46	gold quality
stromal cell of endometrium	CL:0002255	61.05	gold quality
metanephros cortex	UBERON:0010533	59.53	gold quality
cortex of kidney	UBERON:0001225	57.66	gold quality
leukocyte	CL:0000738	56.20	gold quality
monocyte	CL:0000576	55.86	gold quality
metanephros	UBERON:0000081	53.83	gold quality
smooth muscle tissue	UBERON:0001135	53.00	gold quality
gall bladder	UBERON:0002110	51.10	gold quality
cerebellar cortex	UBERON:0002129	49.80	gold quality
islet of Langerhans	UBERON:0000006	49.36	gold quality
ectocervix	UBERON:0012249	49.02	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.65	gold quality
body of uterus	UBERON:0009853	48.43	gold quality
prefrontal cortex	UBERON:0000451	48.37	gold quality
right frontal lobe	UBERON:0002810	47.08	gold quality
pancreas	UBERON:0001264	47.05	gold quality
vermiform appendix	UBERON:0001154	46.80	gold quality
minor salivary gland	UBERON:0001830	46.74	gold quality
body of pancreas	UBERON:0001150	46.62	gold quality
gastrocnemius	UBERON:0001388	45.66	silver quality
skin of hip	UBERON:0001554	45.34	silver quality
left coronary artery	UBERON:0001626	45.14	gold quality
descending thoracic aorta	UBERON:0002345	45.07	gold quality
caecum	UBERON:0001153	44.96	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.54	gold quality
uterus	UBERON:0000995	44.47	gold quality
myometrium	UBERON:0001296	44.45	gold quality
sperm	CL:0000019	44.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.