LINC01792

Summary

LINC01792 (long intergenic non-protein coding RNA 1792, HGNC:52582) is a long non-coding RNA gene on chromosome 2q33.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52582
Approved symbol	LINC01792
Name	long intergenic non-protein coding RNA 1792
Location	2q33.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237166
Ensembl biotype	lncRNA
Entrez	100507140
RNAcentral	URS00002D6C2C — lncRNA, 2050 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000452787, ENST00000653867, ENST00000655127, ENST00000661396, ENST00000663258, ENST00000701746, ENST00000785703, ENST00000785704, ENST00000785705, ENST00000785706, ENST00000785707, ENST00000785708, ENST00000785709, ENST00000785710, ENST00000785711, ENST00000785712, ENST00000785713

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452787 — 4 exons

Exon	Start	End
ENSE00001626170	200716335	200716417
ENSE00003882501	200727061	200727344
ENSE00004161772	200712071	200714130
ENSE00004161773	200735037	200735177

Expression profiles

Bgee: expression breadth broad, 80 present calls, max score 88.48.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2593 / max 54.2742, expressed in 73 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
33171	0.1502	49
33172	0.0608	40
33170	0.0482	13

Top tissues by expression

174 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	88.48	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.45	gold quality
bone marrow cell	CL:0002092	69.73	silver quality
putamen	UBERON:0001874	68.84	gold quality
caudate nucleus	UBERON:0001873	65.58	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	65.48	gold quality
amygdala	UBERON:0001876	64.21	gold quality
spinal cord	UBERON:0002240	63.19	gold quality
medial globus pallidus	UBERON:0002477	62.64	gold quality
prefrontal cortex	UBERON:0000451	61.41	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.34	gold quality
Ammon’s horn	UBERON:0001954	60.33	gold quality
corpus callosum	UBERON:0002336	59.52	gold quality
substantia nigra	UBERON:0002038	59.50	gold quality
nucleus accumbens	UBERON:0001882	59.42	gold quality
globus pallidus	UBERON:0001875	59.00	gold quality
hypothalamus	UBERON:0001898	57.70	gold quality
midbrain	UBERON:0001891	57.12	gold quality
forebrain	UBERON:0001890	56.86	gold quality
endothelial cell	CL:0000115	56.70	silver quality
brain	UBERON:0000955	55.94	gold quality
frontal cortex	UBERON:0001870	55.66	gold quality
right frontal lobe	UBERON:0002810	55.22	gold quality
temporal lobe	UBERON:0001871	54.90	gold quality
neocortex	UBERON:0001950	54.33	gold quality
cerebral cortex	UBERON:0000956	54.20	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	54.13	gold quality
right adrenal gland	UBERON:0001233	53.02	gold quality
upper leg skin	UBERON:0004262	51.17	silver quality
anterior cingulate cortex	UBERON:0009835	50.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.