LINC01794

Summary

LINC01794 (long intergenic non-protein coding RNA 1794, HGNC:52584) is a long non-coding RNA gene on chromosome 2p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52584
Approved symbol	LINC01794
Name	long intergenic non-protein coding RNA 1794
Location	2p22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233128
Ensembl biotype	lncRNA
Entrez	101929700
RNAcentral	URS00026A268F — lncRNA, 539 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000420187, ENST00000655021, ENST00000754004, ENST00000754005, ENST00000754006, ENST00000754007, ENST00000754008, ENST00000754009, ENST00000754010, ENST00000754011, ENST00000754012, ENST00000754013, ENST00000754014, ENST00000754015, ENST00000754016

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420187 — 4 exons

Exon	Start	End
ENSE00001667358	40755138	40755219
ENSE00001691743	40754566	40754629
ENSE00004101625	40746482	40746652
ENSE00004101636	40767216	40767578

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 86.08.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0182 / max 9.9239, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
19898	0.0182	8

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.08	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.33	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.52	gold quality
cortical plate	UBERON:0005343	61.40	gold quality
calcaneal tendon	UBERON:0003701	60.81	gold quality
superior frontal gyrus	UBERON:0002661	60.27	gold quality
adrenal tissue	UBERON:0018303	59.03	gold quality
left testis	UBERON:0004533	56.58	gold quality
monocyte	CL:0000576	56.56	gold quality
testis	UBERON:0000473	56.16	gold quality
endometrium	UBERON:0001295	55.14	gold quality
lymph node	UBERON:0000029	53.64	gold quality
corpus callosum	UBERON:0002336	53.58	gold quality
skin of abdomen	UBERON:0001416	53.16	gold quality
muscle of leg	UBERON:0001383	52.49	gold quality
zone of skin	UBERON:0000014	52.04	gold quality
blood	UBERON:0000178	51.78	silver quality
skin of leg	UBERON:0001511	50.91	gold quality
gall bladder	UBERON:0002110	50.39	gold quality
right testis	UBERON:0004534	49.73	gold quality
primary visual cortex	UBERON:0002436	49.44	gold quality
right adrenal gland	UBERON:0001233	48.66	gold quality
islet of Langerhans	UBERON:0000006	48.57	gold quality
adrenal gland	UBERON:0002369	48.37	gold quality
multicellular organism	UBERON:0000468	48.33	gold quality
right ovary	UBERON:0002118	48.31	gold quality
gastrocnemius	UBERON:0001388	48.18	silver quality
prefrontal cortex	UBERON:0000451	47.83	gold quality
tibial artery	UBERON:0007610	47.05	gold quality
myometrium	UBERON:0001296	46.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.