LINC01798

Summary

LINC01798 (long intergenic non-protein coding RNA 1798, HGNC:52588) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52588
Approved symbol	LINC01798
Name	long intergenic non-protein coding RNA 1798
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232046
Ensembl biotype	lncRNA
Entrez	100507073
RNAcentral	URS000075DC4A — lncRNA, 765 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000411701, ENST00000412944, ENST00000423168, ENST00000426260, ENST00000428590, ENST00000433396, ENST00000435389, ENST00000653254, ENST00000657974, ENST00000659816, ENST00000664251, ENST00000715601, ENST00000758432, ENST00000758436, ENST00000758437, ENST00000758440, ENST00000758442, ENST00000758444, ENST00000758446, ENST00000758448, ENST00000758449, ENST00000758450, ENST00000758451, ENST00000758452, ENST00000758453, ENST00000758454, ENST00000758455, ENST00000758456, ENST00000758457, ENST00000758458, ENST00000758459, ENST00000758460, ENST00000758461, ENST00000758462, ENST00000758463

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411701 — 3 exons

Exon	Start	End
ENSE00001655228	66958788	66958920
ENSE00001775118	66921694	66921759
ENSE00004027352	66945288	66945474

Expression profiles

Bgee: expression breadth ubiquitous, 166 present calls, max score 98.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.8597 / max 352.0418, expressed in 114 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
20655	0.4615	80
20656	0.2963	57
20654	0.1018	34

Top tissues by expression

238 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
oviduct epithelium	UBERON:0004804	98.57	gold quality
buccal mucosa cell	CL:0002336	95.72	gold quality
right uterine tube	UBERON:0001302	92.61	gold quality
secondary oocyte	CL:0000655	92.26	gold quality
cauda epididymis	UBERON:0004360	87.34	gold quality
fallopian tube	UBERON:0003889	87.03	gold quality
oocyte	CL:0000023	86.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.00	gold quality
adrenal tissue	UBERON:0018303	83.43	gold quality
parotid gland	UBERON:0001831	82.74	gold quality
caput epididymis	UBERON:0004358	82.20	gold quality
cerebellar vermis	UBERON:0004720	80.64	gold quality
left uterine tube	UBERON:0001303	79.80	gold quality
muscle layer of sigmoid colon	UBERON:0035805	79.74	gold quality
cerebellum	UBERON:0002037	78.97	gold quality
right hemisphere of cerebellum	UBERON:0014890	78.64	gold quality
cerebellar hemisphere	UBERON:0002245	78.45	gold quality
cerebellar cortex	UBERON:0002129	78.41	gold quality
seminal vesicle	UBERON:0000998	77.88	gold quality
corpus epididymis	UBERON:0004359	77.82	gold quality
smooth muscle tissue	UBERON:0001135	77.79	gold quality
left adrenal gland cortex	UBERON:0035825	76.67	gold quality
body of uterus	UBERON:0009853	76.47	gold quality
adrenal cortex	UBERON:0001235	76.44	gold quality
right adrenal gland	UBERON:0001233	75.95	gold quality
right adrenal gland cortex	UBERON:0035827	75.93	gold quality
left adrenal gland	UBERON:0001234	75.60	gold quality
adrenal gland	UBERON:0002369	75.49	gold quality
visceral pleura	UBERON:0002401	74.47	gold quality
mucosa of stomach	UBERON:0001199	74.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.