LINC01800

Summary

LINC01800 (long intergenic non-protein coding RNA 1800, HGNC:52590) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52590
Approved symbol	LINC01800
Name	long intergenic non-protein coding RNA 1800
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234572
Ensembl biotype	lncRNA
Entrez	101927438
RNAcentral	URS000075A82A — lncRNA, 1982 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000445865, ENST00000692605, ENST00000772000, ENST00000772001, ENST00000772002, ENST00000772003, ENST00000772004, ENST00000772005, ENST00000772006, ENST00000772007, ENST00000772008, ENST00000772009, ENST00000772010, ENST00000772011, ENST00000772012, ENST00000772013, ENST00000772014, ENST00000772015, ENST00000772016, ENST00000772017, ENST00000772018, ENST00000772019, ENST00000772020, ENST00000772021, ENST00000772022, ENST00000772023, ENST00000772024, ENST00000772025, ENST00000772026, ENST00000772027, ENST00000772028, ENST00000772029, ENST00000772753, ENST00000772754, ENST00000772755

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445865 — 5 exons

Exon	Start	End
ENSE00001622179	64849440	64849547
ENSE00001691878	64847797	64847877
ENSE00001777138	64848272	64848363
ENSE00004135522	64863414	64863701
ENSE00004135525	64846130	64847612

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 69.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1657 / max 14.5011, expressed in 63 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
28782	0.1657	63

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	69.24	silver quality
granulocyte	CL:0000094	57.21	gold quality
lymph node	UBERON:0000029	55.43	gold quality
monocyte	CL:0000576	53.76	gold quality
vermiform appendix	UBERON:0001154	52.79	gold quality
islet of Langerhans	UBERON:0000006	51.41	silver quality
tonsil	UBERON:0002372	48.98	gold quality
caecum	UBERON:0001153	48.95	gold quality
spleen	UBERON:0002106	47.87	gold quality
blood	UBERON:0000178	47.78	silver quality
upper leg skin	UBERON:0004262	47.70	silver quality
gastrocnemius	UBERON:0001388	46.57	silver quality
gall bladder	UBERON:0002110	44.39	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.78	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.69	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
small intestine Peyer’s patch	UBERON:0003454	42.46	gold quality
small intestine	UBERON:0002108	42.35	gold quality
heart left ventricle	UBERON:0002084	42.20	gold quality
transverse colon	UBERON:0001157	41.92	gold quality
saliva-secreting gland	UBERON:0001044	41.84	gold quality
anatomical system	UBERON:0000467	41.68	gold quality
multicellular organism	UBERON:0000468	41.61	gold quality
material anatomical entity	UBERON:0000465	41.59	gold quality
bone marrow	UBERON:0002371	41.56	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
cardiac ventricle	UBERON:0002082	41.37	gold quality
colon	UBERON:0001155	41.36	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.