LINC01801

Summary

LINC01801 (long intergenic non-protein coding RNA 1801, HGNC:52592) is a long non-coding RNA gene on chromosome 19q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52592
Approved symbol	LINC01801
Name	long intergenic non-protein coding RNA 1801
Location	19q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267767
Ensembl biotype	lncRNA
Entrez	400685
RNAcentral	URS000075E913 — lncRNA, 2090 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000587150, ENST00000590963, ENST00000603718, ENST00000604749, ENST00000653487, ENST00000654750, ENST00000655389, ENST00000657506, ENST00000657568, ENST00000657681, ENST00000661859, ENST00000665881, ENST00000715855

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587150 — 5 exons

Exon	Start	End
ENSE00002876162	34816249	34816459
ENSE00002878667	34791820	34791915
ENSE00002910245	34816562	34817490
ENSE00003861495	34788527	34788674
ENSE00003869702	34818587	34818711

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 82.19.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1054 / max 69.9182, expressed in 21 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
180453	0.0470	17
180456	0.0424	4
180457	0.0085	3
180458	0.0076	3

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.19	gold quality
testis	UBERON:0000473	69.07	gold quality
right testis	UBERON:0004534	68.96	gold quality
left testis	UBERON:0004533	68.69	gold quality
cortical plate	UBERON:0005343	68.43	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.69	gold quality
bone marrow cell	CL:0002092	65.51	silver quality
ganglionic eminence	UBERON:0004023	64.46	gold quality
tonsil	UBERON:0002372	61.98	gold quality
granulocyte	CL:0000094	61.94	gold quality
ventricular zone	UBERON:0003053	61.74	gold quality
placenta	UBERON:0001987	59.02	gold quality
smooth muscle tissue	UBERON:0001135	58.77	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.53	silver quality
lymph node	UBERON:0000029	58.47	gold quality
bone marrow	UBERON:0002371	58.27	silver quality
blood	UBERON:0000178	57.80	gold quality
vermiform appendix	UBERON:0001154	57.80	gold quality
fallopian tube	UBERON:0003889	56.50	gold quality
apex of heart	UBERON:0002098	56.27	gold quality
skeletal muscle tissue	UBERON:0001134	55.69	gold quality
leukocyte	CL:0000738	55.38	gold quality
omental fat pad	UBERON:0010414	54.51	gold quality
right uterine tube	UBERON:0001302	54.17	gold quality
gall bladder	UBERON:0002110	53.76	gold quality
sural nerve	UBERON:0015488	53.62	silver quality
adipose tissue	UBERON:0001013	53.07	gold quality
cortex of kidney	UBERON:0001225	53.01	gold quality
lung	UBERON:0002048	52.97	gold quality
rectum	UBERON:0001052	52.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.