LINC01804

Summary

LINC01804 (long intergenic non-protein coding RNA 1804, HGNC:52596) is a long non-coding RNA gene on chromosome 2p24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52596
Approved symbol	LINC01804
Name	long intergenic non-protein coding RNA 1804
Location	2p24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231031
Ensembl biotype	lncRNA
Entrez	101926966
RNAcentral	URS0000759D90 — lncRNA, 1871 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000436967, ENST00000476839, ENST00000492352, ENST00000770646, ENST00000770647, ENST00000770648, ENST00000770649, ENST00000770650, ENST00000770651, ENST00000770652, ENST00000770653, ENST00000770654, ENST00000770655, ENST00000770656, ENST00000770657, ENST00000770658

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436967 — 5 exons

Exon	Start	End
ENSE00001732144	15743489	15743523
ENSE00001805327	15744226	15744339
ENSE00001891308	15700390	15700535
ENSE00003755379	15701229	15701375
ENSE00004132944	15690823	15691098

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 82.19.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0191 / max 6.6243, expressed in 10 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
18991	0.0191	10

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.19	gold quality
sural nerve	UBERON:0015488	75.81	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.12	gold quality
stromal cell of endometrium	CL:0002255	61.37	gold quality
bone marrow	UBERON:0002371	58.70	gold quality
lymph node	UBERON:0000029	58.28	gold quality
rectum	UBERON:0001052	55.44	gold quality
prefrontal cortex	UBERON:0000451	55.12	gold quality
ganglionic eminence	UBERON:0004023	54.92	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	54.34	gold quality
placenta	UBERON:0001987	54.18	gold quality
vermiform appendix	UBERON:0001154	54.10	gold quality
monocyte	CL:0000576	53.59	gold quality
gall bladder	UBERON:0002110	53.23	gold quality
superior frontal gyrus	UBERON:0002661	52.32	gold quality
blood	UBERON:0000178	52.18	silver quality
granulocyte	CL:0000094	51.27	silver quality
endometrium	UBERON:0001295	50.74	gold quality
muscle of leg	UBERON:0001383	50.66	gold quality
tonsil	UBERON:0002372	50.66	gold quality
islet of Langerhans	UBERON:0000006	50.47	gold quality
gastrocnemius	UBERON:0001388	50.32	gold quality
smooth muscle tissue	UBERON:0001135	49.50	gold quality
heart left ventricle	UBERON:0002084	48.82	gold quality
Ammon’s horn	UBERON:0001954	48.52	gold quality
tibial artery	UBERON:0007610	47.28	gold quality
testis	UBERON:0000473	47.00	gold quality
right ovary	UBERON:0002118	46.82	gold quality
cerebral cortex	UBERON:0000956	46.22	gold quality
left testis	UBERON:0004533	46.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.