LINC01806

Summary

LINC01806 (long intergenic non-protein coding RNA 1806, HGNC:52599) is a long non-coding RNA gene on chromosome 2q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52599
Approved symbol	LINC01806
Name	long intergenic non-protein coding RNA 1806
Location	2q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227403
Ensembl biotype	lncRNA
Entrez	100996579
RNAcentral	URS000075E94D — lncRNA, 2392 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000436506, ENST00000439050, ENST00000655684, ENST00000689088, ENST00000804015, ENST00000804016, ENST00000804017, ENST00000804018, ENST00000804019, ENST00000804020, ENST00000804021, ENST00000804022, ENST00000804023, ENST00000804024

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436506 — 3 exons

Exon	Start	End
ENSE00001645050	161246771	161249050
ENSE00001658709	161245424	161245467
ENSE00004195007	161244743	161244895

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 73.33.

FANTOM5 (CAGE): breadth broad, TPM avg 0.4040 / max 11.1666, expressed in 252 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
23309	0.4040	252

Top tissues by expression

222 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
esophagus squamous epithelium	UBERON:0006920	73.33	gold quality
islet of Langerhans	UBERON:0000006	73.31	gold quality
corpus epididymis	UBERON:0004359	72.98	gold quality
thyroid gland	UBERON:0002046	72.71	gold quality
kidney epithelium	UBERON:0004819	72.66	gold quality
left lobe of thyroid gland	UBERON:0001120	72.37	gold quality
pancreatic ductal cell	CL:0002079	71.70	silver quality
bronchial epithelial cell	CL:0002328	71.47	gold quality
bone marrow cell	CL:0002092	70.42	silver quality
right lobe of thyroid gland	UBERON:0001119	70.15	gold quality
bronchus	UBERON:0002185	70.07	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	69.19	gold quality
palpebral conjunctiva	UBERON:0001812	69.10	gold quality
epithelial cell of pancreas	CL:0000083	68.88	silver quality
pancreas	UBERON:0001264	68.55	gold quality
rectum	UBERON:0001052	68.38	gold quality
esophagus mucosa	UBERON:0002469	67.56	gold quality
caput epididymis	UBERON:0004358	67.39	gold quality
body of pancreas	UBERON:0001150	66.34	gold quality
esophagus	UBERON:0001043	66.00	gold quality
amniotic fluid	UBERON:0000173	65.70	gold quality
vermiform appendix	UBERON:0001154	65.33	gold quality
ileal mucosa	UBERON:0000331	65.17	gold quality
lymph node	UBERON:0000029	65.06	gold quality
tibialis anterior	UBERON:0001385	64.96	silver quality
nasal cavity mucosa	UBERON:0001826	64.54	gold quality
right lobe of liver	UBERON:0001114	64.52	gold quality
oral cavity	UBERON:0000167	64.21	silver quality
epithelium of nasopharynx	UBERON:0001951	64.04	silver quality
liver	UBERON:0002107	63.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.39

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01806 Promotes Breast Cancer Growth and Metastasis via Sponging miR-1286 to Disinhibit ZEB1 Expression. (PMID:37812283)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.