LINC01809

Summary

LINC01809 (long intergenic non-protein coding RNA 1809, HGNC:52612) is a long non-coding RNA gene on chromosome 2p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52612
Approved symbol	LINC01809
Name	long intergenic non-protein coding RNA 1809
Location	2p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232548
Ensembl biotype	lncRNA
Entrez	101928031
RNAcentral	URS0000BC4542 — lncRNA, 318 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000448431

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448431 — 2 exons

Exon	Start	End
ENSE00001642295	83523258	83523502
ENSE00001766189	83522814	83522871

Expression profiles

Bgee: expression breadth broad, 71 present calls, max score 91.83.

Top tissues by expression

186 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.83	gold quality
bone marrow cell	CL:0002092	73.72	silver quality
Brodmann (1909) area 9	UBERON:0013540	61.20	gold quality
secondary oocyte	CL:0000655	59.34	gold quality
gastrocnemius	UBERON:0001388	57.82	gold quality
monocyte	CL:0000576	57.76	gold quality
right lobe of liver	UBERON:0001114	56.31	gold quality
buccal mucosa cell	CL:0002336	53.08	gold quality
lower esophagus muscularis layer	UBERON:0035833	51.50	gold quality
left adrenal gland	UBERON:0001234	49.98	gold quality
body of uterus	UBERON:0009853	49.90	gold quality
ascending aorta	UBERON:0001496	49.83	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	49.52	gold quality
tibial artery	UBERON:0007610	49.27	gold quality
body of stomach	UBERON:0001161	49.00	gold quality
tendon of biceps brachii	UBERON:0008188	48.53	gold quality
left coronary artery	UBERON:0001626	48.07	gold quality
aorta	UBERON:0000947	47.59	gold quality
right atrium auricular region	UBERON:0006631	47.17	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	46.43	gold quality
deltoid	UBERON:0001476	46.07	gold quality
lower lobe of lung	UBERON:0008949	45.59	silver quality
jejunum	UBERON:0002115	45.53	gold quality
upper lobe of lung	UBERON:0008948	45.45	silver quality
skin of leg	UBERON:0001511	45.44	gold quality
right hemisphere of cerebellum	UBERON:0014890	45.30	silver quality
cerebellar cortex	UBERON:0002129	45.16	silver quality
skin of abdomen	UBERON:0001416	44.96	gold quality
upper leg skin	UBERON:0004262	44.87	silver quality
upper lobe of left lung	UBERON:0008952	44.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.