LINC01811

Summary

LINC01811 (long intergenic non-protein coding RNA 1811, HGNC:52615) is a long non-coding RNA gene on chromosome 3p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52615
Approved symbol	LINC01811
Name	long intergenic non-protein coding RNA 1811
Location	3p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226320
Ensembl biotype	lncRNA
Entrez	101928114
RNAcentral	URS00026A1A11 — lncRNA, 1196 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 78 — 78 lncRNA

ENST00000415991, ENST00000424786, ENST00000654751, ENST00000655439, ENST00000655650, ENST00000655660, ENST00000656055, ENST00000656064, ENST00000657826, ENST00000658600, ENST00000658638, ENST00000659000, ENST00000659641, ENST00000659779, ENST00000659868, ENST00000660055, ENST00000660092, ENST00000660133, ENST00000660434, ENST00000661678, ENST00000662710, ENST00000664458, ENST00000664996, ENST00000665018, ENST00000665082, ENST00000665711, ENST00000667060, ENST00000669904, ENST00000670158, ENST00000670306, ENST00000670897, ENST00000671575, ENST00000721491, ENST00000721492, ENST00000721493, ENST00000721494, ENST00000721495, ENST00000721496, ENST00000721497, ENST00000721498, ENST00000721499, ENST00000721500, ENST00000721501, ENST00000721502, ENST00000721503, ENST00000721504, ENST00000721505, ENST00000721506, ENST00000721507, ENST00000721508, ENST00000721509, ENST00000721510, ENST00000721511, ENST00000721512, ENST00000721513, ENST00000721514, ENST00000721515, ENST00000721516, ENST00000721517, ENST00000721518, ENST00000721519, ENST00000721520, ENST00000721521, ENST00000721522, ENST00000721523, ENST00000721524, ENST00000721525, ENST00000721526, ENST00000721527, ENST00000721528, ENST00000721529, ENST00000721530, ENST00000721531, ENST00000721532, ENST00000721533, ENST00000721534, ENST00000721535, ENST00000721536

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415991 — 6 exons

Exon	Start	End
ENSE00001593069	34346222	34346289
ENSE00001625069	34170845	34170920
ENSE00001681786	34360271	34360361
ENSE00001695143	34159382	34159416
ENSE00001734341	34360805	34361061
ENSE00001774044	34298853	34298919

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 78.54.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0439 / max 26.4957, expressed in 12 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
35972	0.0302	8
35970	0.0059	2
202719	0.0036	2
35971	0.0024	2
35958	0.0018	1

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.54	gold quality
sural nerve	UBERON:0015488	75.71	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.89	gold quality
left testis	UBERON:0004533	74.43	gold quality
testis	UBERON:0000473	74.42	gold quality
right testis	UBERON:0004534	73.87	gold quality
thymus	UBERON:0002370	69.79	silver quality
cerebellar vermis	UBERON:0004720	69.78	gold quality
colonic epithelium	UBERON:0000397	69.63	silver quality
cortical plate	UBERON:0005343	65.62	gold quality
skeletal muscle tissue	UBERON:0001134	65.24	silver quality
quadriceps femoris	UBERON:0001377	64.91	gold quality
adrenal tissue	UBERON:0018303	61.24	gold quality
leukocyte	CL:0000738	58.51	gold quality
lymph node	UBERON:0000029	58.25	gold quality
monocyte	CL:0000576	57.60	gold quality
ganglionic eminence	UBERON:0004023	57.53	silver quality
corpus callosum	UBERON:0002336	57.51	gold quality
tonsil	UBERON:0002372	57.30	gold quality
superior frontal gyrus	UBERON:0002661	57.11	gold quality
prefrontal cortex	UBERON:0000451	56.50	gold quality
liver	UBERON:0002107	56.44	gold quality
bone marrow	UBERON:0002371	56.04	gold quality
blood	UBERON:0000178	55.21	gold quality
small intestine	UBERON:0002108	54.40	gold quality
small intestine Peyer’s patch	UBERON:0003454	54.34	gold quality
lung	UBERON:0002048	54.04	gold quality
primary visual cortex	UBERON:0002436	54.03	gold quality
spleen	UBERON:0002106	53.65	gold quality
duodenum	UBERON:0002114	53.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.03

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.