LINC01817

Summary

LINC01817 (long intergenic non-protein coding RNA 1817, HGNC:52622) is a long non-coding RNA gene on chromosome 2q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52622
Approved symbol	LINC01817
Name	long intergenic non-protein coding RNA 1817
Location	2q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231420
Ensembl biotype	lncRNA
Entrez	105373683
RNAcentral	URS00002229EE — lncRNA, 564 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000429317, ENST00000804046

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429317 — 3 exons

Exon	Start	End
ENSE00001602223	150245583	150245687
ENSE00001634961	150234892	150235201
ENSE00001740331	150256859	150257007

Expression profiles

Bgee: expression breadth broad, 58 present calls, max score 87.67.

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.67	gold quality
liver	UBERON:0002107	60.98	gold quality
prefrontal cortex	UBERON:0000451	59.31	gold quality
endometrium	UBERON:0001295	57.69	gold quality
blood	UBERON:0000178	56.77	gold quality
lymph node	UBERON:0000029	55.17	gold quality
muscle of leg	UBERON:0001383	51.36	gold quality
gastrocnemius	UBERON:0001388	50.46	gold quality
spleen	UBERON:0002106	50.04	gold quality
monocyte	CL:0000576	49.83	silver quality
right lobe of liver	UBERON:0001114	48.26	silver quality
placenta	UBERON:0001987	46.79	gold quality
amygdala	UBERON:0001876	46.64	gold quality
putamen	UBERON:0001874	46.08	gold quality
ovary	UBERON:0000992	45.92	gold quality
left adrenal gland cortex	UBERON:0035825	45.77	gold quality
heart left ventricle	UBERON:0002084	45.64	gold quality
lung	UBERON:0002048	45.27	gold quality
right ovary	UBERON:0002118	44.75	gold quality
prostate gland	UBERON:0002367	44.23	gold quality
left adrenal gland	UBERON:0001234	44.01	silver quality
popliteal artery	UBERON:0002250	43.74	gold quality
heart	UBERON:0000948	43.10	silver quality
myometrium	UBERON:0001296	42.48	silver quality
right adrenal gland cortex	UBERON:0035827	42.46	silver quality
Ammon’s horn	UBERON:0001954	42.44	silver quality
body of pancreas	UBERON:0001150	42.33	silver quality
right atrium auricular region	UBERON:0006631	41.76	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	41.73	gold quality
upper lobe of left lung	UBERON:0008952	41.39	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.