LINC01820

Summary

LINC01820 (long intergenic non-protein coding RNA 1820, HGNC:52625) is a long non-coding RNA gene on chromosome 2p21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52625
Approved symbol	LINC01820
Name	long intergenic non-protein coding RNA 1820
Location	2p21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228100
Ensembl biotype	lncRNA
Entrez	105374582
RNAcentral	URS0000BC44DE — lncRNA, 574 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 64 — 64 lncRNA

ENST00000418415, ENST00000654557, ENST00000665509, ENST00000669411, ENST00000843945, ENST00000843946, ENST00000843947, ENST00000843948, ENST00000843949, ENST00000843950, ENST00000843951, ENST00000843952, ENST00000843953, ENST00000843954, ENST00000843955, ENST00000843956, ENST00000843957, ENST00000843958, ENST00000843959, ENST00000843960, ENST00000843961, ENST00000843962, ENST00000843963, ENST00000843964, ENST00000843965, ENST00000843966, ENST00000843967, ENST00000843968, ENST00000843969, ENST00000843970, ENST00000843971, ENST00000843972, ENST00000843973, ENST00000843974, ENST00000843975, ENST00000843976, ENST00000843977, ENST00000843978, ENST00000843979, ENST00000843980, ENST00000843981, ENST00000843982, ENST00000843983, ENST00000843984, ENST00000843985, ENST00000843986, ENST00000843987, ENST00000843988, ENST00000843989, ENST00000843990, ENST00000843991, ENST00000843992, ENST00000843993, ENST00000843994, ENST00000843995, ENST00000843996, ENST00000843997, ENST00000843998, ENST00000843999, ENST00000844000, ENST00000844001, ENST00000844002, ENST00000844003, ENST00000844004

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418415 — 3 exons

Exon	Start	End
ENSE00001603980	46392291	46392483
ENSE00001647839	46393113	46393345
ENSE00003869468	46394018	46394228

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 88.50.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0276 / max 27.9673, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
28183	0.0276	3

Top tissues by expression

81 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.50	gold quality
right testis	UBERON:0004534	81.77	gold quality
left testis	UBERON:0004533	81.49	gold quality
testis	UBERON:0000473	80.77	gold quality
bone marrow cell	CL:0002092	77.64	gold quality
lower esophagus mucosa	UBERON:0035834	71.08	gold quality
placenta	UBERON:0001987	67.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.10	gold quality
esophagus mucosa	UBERON:0002469	58.69	gold quality
esophagus	UBERON:0001043	57.35	gold quality
multicellular organism	UBERON:0000468	56.34	gold quality
myometrium	UBERON:0001296	56.29	gold quality
liver	UBERON:0002107	55.61	silver quality
left coronary artery	UBERON:0001626	53.83	gold quality
blood	UBERON:0000178	51.96	gold quality
lymph node	UBERON:0000029	51.42	gold quality
islet of Langerhans	UBERON:0000006	50.25	gold quality
monocyte	CL:0000576	50.00	silver quality
gastrocnemius	UBERON:0001388	49.82	gold quality
prefrontal cortex	UBERON:0000451	49.65	gold quality
uterine cervix	UBERON:0000002	48.49	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.14	gold quality
ectocervix	UBERON:0012249	48.06	gold quality
heart left ventricle	UBERON:0002084	47.99	gold quality
adult mammalian kidney	UBERON:0000082	47.36	gold quality
gall bladder	UBERON:0002110	46.96	gold quality
minor salivary gland	UBERON:0001830	46.92	gold quality
heart	UBERON:0000948	46.66	gold quality
right lobe of liver	UBERON:0001114	46.55	silver quality
anterior cingulate cortex	UBERON:0009835	45.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.