LINC01824

Summary

LINC01824 (long intergenic non-protein coding RNA 1824, HGNC:52630) is a long non-coding RNA gene on chromosome 2p25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52630
Approved symbol	LINC01824
Name	long intergenic non-protein coding RNA 1824
Location	2p25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226488
Ensembl biotype	lncRNA
Entrez	107985844
RNAcentral	URS0000EF5577 — lncRNA, 1359 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000436082, ENST00000660485, ENST00000661143, ENST00000663983, ENST00000668317, ENST00000747077, ENST00000747078

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436082 — 3 exons

Exon	Start	End
ENSE00001743989	6502726	6502855
ENSE00004088648	6503659	6503945
ENSE00004088651	6495798	6496252

Expression profiles

Bgee: expression breadth broad, 42 present calls, max score 85.56.

Top tissues by expression

42 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.56	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.35	gold quality
monocyte	CL:0000576	62.17	gold quality
cortical plate	UBERON:0005343	61.00	gold quality
islet of Langerhans	UBERON:0000006	53.18	gold quality
prefrontal cortex	UBERON:0000451	50.75	silver quality
testis	UBERON:0000473	50.35	gold quality
left testis	UBERON:0004533	50.02	gold quality
right testis	UBERON:0004534	49.70	gold quality
blood	UBERON:0000178	49.66	gold quality
tibial artery	UBERON:0007610	48.05	silver quality
multicellular organism	UBERON:0000468	47.03	gold quality
body of pancreas	UBERON:0001150	47.00	silver quality
heart	UBERON:0000948	46.88	silver quality
primary visual cortex	UBERON:0002436	46.17	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.48	gold quality
nucleus accumbens	UBERON:0001882	45.05	gold quality
superior frontal gyrus	UBERON:0002661	44.93	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	43.22	silver quality
right hemisphere of cerebellum	UBERON:0014890	43.01	gold quality
frontal cortex	UBERON:0001870	42.80	silver quality
cerebral cortex	UBERON:0000956	42.75	silver quality
fallopian tube	UBERON:0003889	41.55	silver quality
fundus of stomach	UBERON:0001160	41.07	silver quality
lower esophagus muscularis layer	UBERON:0035833	40.86	silver quality
esophagus mucosa	UBERON:0002469	40.35	silver quality
adipose tissue	UBERON:0001013	40.07	silver quality
right lobe of thyroid gland	UBERON:0001119	39.70	silver quality
Ammon’s horn	UBERON:0001954	39.37	silver quality
anterior cingulate cortex	UBERON:0009835	39.35	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.