LINC01827

Summary

LINC01827 (long intergenic non-protein coding RNA 1827, HGNC:52633) is a long non-coding RNA gene on chromosome 2q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52633
Approved symbol	LINC01827
Name	long intergenic non-protein coding RNA 1827
Location	2q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234919
Ensembl biotype	lncRNA
Entrez	105373818
RNAcentral	URS00026A26CE — lncRNA, 402 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000432711, ENST00000809472, ENST00000809473

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432711 — 2 exons

Exon	Start	End
ENSE00004205275	195572651	195572992
ENSE00004205277	195569627	195569862

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 85.58.

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.58	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.72	gold quality
ventricular zone	UBERON:0003053	66.73	gold quality
right testis	UBERON:0004534	65.63	gold quality
left testis	UBERON:0004533	64.33	gold quality
testis	UBERON:0000473	63.79	gold quality
ganglionic eminence	UBERON:0004023	62.34	gold quality
cortical plate	UBERON:0005343	61.52	gold quality
skeletal muscle tissue	UBERON:0001134	60.02	gold quality
gall bladder	UBERON:0002110	59.55	gold quality
prefrontal cortex	UBERON:0000451	58.61	gold quality
lymph node	UBERON:0000029	57.50	gold quality
superior frontal gyrus	UBERON:0002661	57.30	gold quality
primary visual cortex	UBERON:0002436	56.75	gold quality
sural nerve	UBERON:0015488	56.67	silver quality
monocyte	CL:0000576	55.66	gold quality
calcaneal tendon	UBERON:0003701	55.20	gold quality
frontal cortex	UBERON:0001870	54.86	gold quality
islet of Langerhans	UBERON:0000006	54.56	gold quality
granulocyte	CL:0000094	54.11	gold quality
right coronary artery	UBERON:0001625	54.06	gold quality
blood	UBERON:0000178	53.85	gold quality
bone marrow	UBERON:0002371	53.59	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	53.45	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.85	gold quality
cerebral cortex	UBERON:0000956	52.18	gold quality
adrenal tissue	UBERON:0018303	51.72	gold quality
vermiform appendix	UBERON:0001154	51.61	gold quality
right frontal lobe	UBERON:0002810	51.37	gold quality
placenta	UBERON:0001987	50.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.