LINC01828

Summary

LINC01828 (long intergenic non-protein coding RNA 1828, HGNC:52634) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52634
Approved symbol	LINC01828
Name	long intergenic non-protein coding RNA 1828
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235885
Ensembl biotype	lncRNA
Entrez	102800447
RNAcentral	URS000075A0A5 — lncRNA, 701 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000445514, ENST00000450294, ENST00000452716, ENST00000593336, ENST00000594329, ENST00000598583, ENST00000618608, ENST00000626583, ENST00000627247, ENST00000628692, ENST00000629960, ENST00000630617, ENST00000631099, ENST00000657551, ENST00000821576, ENST00000821577

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445514 — 4 exons

Exon	Start	End
ENSE00001653307	67213408	67213495
ENSE00001697659	67229399	67229495
ENSE00001754386	67244312	67244574
ENSE00001787670	67243279	67243361

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 84.68.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0235 / max 13.1689, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
20658	0.0235	9

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.68	gold quality
right uterine tube	UBERON:0001302	73.36	gold quality
bone marrow cell	CL:0002092	72.63	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.51	gold quality
body of pancreas	UBERON:0001150	72.33	gold quality
cerebellar hemisphere	UBERON:0002245	69.16	gold quality
right hemisphere of cerebellum	UBERON:0014890	69.13	gold quality
cerebellar cortex	UBERON:0002129	68.92	gold quality
adrenal tissue	UBERON:0018303	68.46	gold quality
cerebellum	UBERON:0002037	66.77	gold quality
ventricular zone	UBERON:0003053	66.62	gold quality
buccal mucosa cell	CL:0002336	66.54	silver quality
left uterine tube	UBERON:0001303	65.94	gold quality
muscle layer of sigmoid colon	UBERON:0035805	65.94	gold quality
pancreas	UBERON:0001264	65.34	gold quality
stromal cell of endometrium	CL:0002255	64.64	gold quality
colonic epithelium	UBERON:0000397	64.27	silver quality
left adrenal gland cortex	UBERON:0035825	62.65	gold quality
body of uterus	UBERON:0009853	62.46	gold quality
right adrenal gland	UBERON:0001233	62.27	gold quality
ectocervix	UBERON:0012249	61.79	gold quality
left adrenal gland	UBERON:0001234	61.60	gold quality
adrenal gland	UBERON:0002369	61.36	gold quality
lower esophagus	UBERON:0013473	61.05	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.00	gold quality
mucosa of stomach	UBERON:0001199	60.99	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	60.74	gold quality
adrenal cortex	UBERON:0001235	60.62	gold quality
right adrenal gland cortex	UBERON:0035827	60.26	gold quality
endocervix	UBERON:0000458	59.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.