LINC01829

Summary

LINC01829 (long intergenic non-protein coding RNA 1829, HGNC:52635) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52635
Approved symbol	LINC01829
Name	long intergenic non-protein coding RNA 1829
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236780
Ensembl biotype	lncRNA
Entrez	644838
RNAcentral	URS00002BE7F9 — lncRNA, 2100 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 32 lncRNA

ENST00000414404, ENST00000433133, ENST00000447453, ENST00000652561, ENST00000657304, ENST00000821349, ENST00000821350, ENST00000821351, ENST00000821352, ENST00000821353, ENST00000821354, ENST00000821355, ENST00000821356, ENST00000821357, ENST00000821358, ENST00000821359, ENST00000821360, ENST00000821361, ENST00000821362, ENST00000821363, ENST00000821364, ENST00000821365, ENST00000821366, ENST00000821367, ENST00000821368, ENST00000821369, ENST00000821370, ENST00000821371, ENST00000821372, ENST00000821373, ENST00000821374, ENST00000821375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414404 — 5 exons

Exon	Start	End
ENSE00001630094	67177582	67177712
ENSE00001674172	67205509	67205563
ENSE00001723720	67203116	67203173
ENSE00004228080	67175148	67175699
ENSE00004228090	67215228	67215399

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 97.51.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3955 / max 45.1507, expressed in 175 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
28830	0.2793	143
28828	0.0603	11
28829	0.0372	18
28827	0.0186	12

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	97.51	gold quality
right uterine tube	UBERON:0001302	91.35	gold quality
pancreas	UBERON:0001264	87.92	gold quality
left adrenal gland cortex	UBERON:0035825	86.43	gold quality
right adrenal gland	UBERON:0001233	85.98	gold quality
right adrenal gland cortex	UBERON:0035827	84.84	gold quality
left adrenal gland	UBERON:0001234	84.06	gold quality
adrenal gland	UBERON:0002369	83.15	gold quality
mucosa of stomach	UBERON:0001199	79.26	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.07	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	79.07	gold quality
tonsil	UBERON:0002372	76.60	gold quality
saliva-secreting gland	UBERON:0001044	75.10	gold quality
sural nerve	UBERON:0015488	75.08	gold quality
adrenal tissue	UBERON:0018303	73.58	gold quality
fallopian tube	UBERON:0003889	73.24	gold quality
minor salivary gland	UBERON:0001830	72.80	gold quality
muscle layer of sigmoid colon	UBERON:0035805	71.08	gold quality
islet of Langerhans	UBERON:0000006	70.58	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.04	gold quality
bone marrow cell	CL:0002092	68.93	silver quality
colonic epithelium	UBERON:0000397	67.56	silver quality
smooth muscle tissue	UBERON:0001135	67.45	gold quality
left uterine tube	UBERON:0001303	67.42	gold quality
stromal cell of endometrium	CL:0002255	66.63	gold quality
colon	UBERON:0001155	65.96	gold quality
lower esophagus muscularis layer	UBERON:0035833	64.72	gold quality
lower esophagus	UBERON:0013473	64.70	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	63.68	gold quality
intestine	UBERON:0000160	62.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	13.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.