LINC01830

Summary

LINC01830 (long intergenic non-protein coding RNA 1830, HGNC:52636) is a long non-coding RNA gene on chromosome 2p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52636
Approved symbol	LINC01830
Name	long intergenic non-protein coding RNA 1830
Location	2p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228999
Ensembl biotype	lncRNA
Entrez	105374322
RNAcentral	URS00026A2040 — lncRNA, 651 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000430520, ENST00000450551, ENST00000637384, ENST00000650514, ENST00000654338, ENST00000662115, ENST00000668119, ENST00000669301, ENST00000669355, ENST00000782924, ENST00000782925, ENST00000833262, ENST00000833263, ENST00000833264, ENST00000833265, ENST00000833266, ENST00000833267, ENST00000833268, ENST00000833269, ENST00000833270, ENST00000833271, ENST00000833272, ENST00000833273, ENST00000833274, ENST00000833275

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430520 — 2 exons

Exon	Start	End
ENSE00001612649	21942178	21944992
ENSE00001787481	21965357	21965551

Expression profiles

Bgee: expression breadth broad, 78 present calls, max score 75.51.

Top tissues by expression

78 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.51	gold quality
anterior cingulate cortex	UBERON:0009835	68.96	gold quality
superior frontal gyrus	UBERON:0002661	67.30	gold quality
prefrontal cortex	UBERON:0000451	67.00	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.02	gold quality
ventricular zone	UBERON:0003053	65.38	gold quality
frontal cortex	UBERON:0001870	63.57	gold quality
cerebral cortex	UBERON:0000956	62.95	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	62.15	gold quality
liver	UBERON:0002107	61.99	silver quality
ganglionic eminence	UBERON:0004023	61.08	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.89	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.28	silver quality
calcaneal tendon	UBERON:0003701	59.27	gold quality
right frontal lobe	UBERON:0002810	58.23	gold quality
brain	UBERON:0000955	55.39	gold quality
cerebellar hemisphere	UBERON:0002245	54.60	gold quality
testis	UBERON:0000473	54.15	gold quality
monocyte	CL:0000576	53.89	gold quality
left testis	UBERON:0004533	53.89	gold quality
cerebellar cortex	UBERON:0002129	53.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.40	gold quality
multicellular organism	UBERON:0000468	52.60	gold quality
right testis	UBERON:0004534	52.34	gold quality
blood	UBERON:0000178	51.05	silver quality
putamen	UBERON:0001874	49.83	gold quality
islet of Langerhans	UBERON:0000006	48.34	silver quality
left ovary	UBERON:0002119	48.04	gold quality
Ammon’s horn	UBERON:0001954	47.83	gold quality
lymph node	UBERON:0000029	47.69	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.