LINC01838

Summary

LINC01838 (long intergenic non-protein coding RNA 1838, HGNC:52654) is a long non-coding RNA gene on chromosome 19q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52654
Approved symbol	LINC01838
Name	long intergenic non-protein coding RNA 1838
Location	19q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000269037
Ensembl biotype	lncRNA
Entrez	100652911
RNAcentral	URS00008BAAB0 — lncRNA, 1660 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000595783, ENST00000730231, ENST00000730232

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000595783 — 2 exons

Exon	Start	End
ENSE00004058582	34904780	34906224
ENSE00004058584	34907442	34908195

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 86.88.

Top tissues by expression

156 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
superficial temporal artery	UBERON:0001614	86.88	gold quality
mucosa of paranasal sinus	UBERON:0005030	86.31	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	79.79	gold quality
gingival epithelium	UBERON:0001949	79.34	gold quality
left testis	UBERON:0004533	75.56	gold quality
right testis	UBERON:0004534	74.90	gold quality
cardia of stomach	UBERON:0001162	74.75	gold quality
gingiva	UBERON:0001828	74.31	gold quality
tonsil	UBERON:0002372	73.95	gold quality
epithelium of nasopharynx	UBERON:0001951	73.78	gold quality
testis	UBERON:0000473	73.37	gold quality
ventral tegmental area	UBERON:0002691	73.05	gold quality
omental fat pad	UBERON:0010414	72.82	gold quality
lateral globus pallidus	UBERON:0002476	72.66	gold quality
coronary artery	UBERON:0001621	72.51	gold quality
inferior vagus X ganglion	UBERON:0005363	72.14	gold quality
vena cava	UBERON:0004087	72.03	gold quality
subthalamic nucleus	UBERON:0001906	71.96	gold quality
adult mammalian kidney	UBERON:0000082	71.84	gold quality
thymus	UBERON:0002370	71.78	gold quality
caecum	UBERON:0001153	71.72	gold quality
cerebellar hemisphere	UBERON:0002245	71.69	gold quality
lateral nuclear group of thalamus	UBERON:0002736	71.66	gold quality
dorsal plus ventral thalamus	UBERON:0001897	71.65	gold quality
cerebellar vermis	UBERON:0004720	71.65	gold quality
peritoneum	UBERON:0002358	71.63	gold quality
saphenous vein	UBERON:0007318	71.57	gold quality
substantia nigra pars compacta	UBERON:0001965	71.55	gold quality
corpus callosum	UBERON:0002336	71.51	gold quality
superior surface of tongue	UBERON:0007371	71.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.