LINC01839

Summary

LINC01839 (long intergenic non-protein coding RNA 1839, HGNC:41330) is a long non-coding RNA gene on chromosome 3q27.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41330
Approved symbol	LINC01839
Name	long intergenic non-protein coding RNA 1839
Location	3q27.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227509
Ensembl biotype	lncRNA
Entrez	105374251
RNAcentral	URS000028CC4D — lncRNA, 727 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000451348

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000451348 — 2 exons

Exon	Start	End
ENSE00001700214	184507740	184508399
ENSE00001798173	184505113	184505179

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 68.02.

Top tissues by expression

73 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
endocervix	UBERON:0000458	68.02	gold quality
pancreas	UBERON:0001264	59.78	gold quality
myometrium	UBERON:0001296	56.30	gold quality
calcaneal tendon	UBERON:0003701	55.38	gold quality
prefrontal cortex	UBERON:0000451	54.05	gold quality
right ovary	UBERON:0002118	52.15	gold quality
lymph node	UBERON:0000029	51.28	gold quality
placenta	UBERON:0001987	51.08	gold quality
blood	UBERON:0000178	50.72	silver quality
gall bladder	UBERON:0002110	50.18	gold quality
ovary	UBERON:0000992	49.79	gold quality
urinary bladder	UBERON:0001255	49.18	gold quality
descending thoracic aorta	UBERON:0002345	48.80	gold quality
body of stomach	UBERON:0001161	48.60	gold quality
stomach	UBERON:0000945	48.55	gold quality
left ovary	UBERON:0002119	48.28	gold quality
adrenal gland	UBERON:0002369	48.28	gold quality
muscle of leg	UBERON:0001383	48.02	silver quality
endometrium	UBERON:0001295	47.60	gold quality
subcutaneous adipose tissue	UBERON:0002190	47.27	gold quality
monocyte	CL:0000576	47.17	silver quality
adipose tissue	UBERON:0001013	47.04	gold quality
fundus of stomach	UBERON:0001160	46.82	gold quality
thoracic mammary gland	UBERON:0005200	46.76	gold quality
omental fat pad	UBERON:0010414	46.21	gold quality
gastrocnemius	UBERON:0001388	45.86	silver quality
lung	UBERON:0002048	45.59	gold quality
left adrenal gland cortex	UBERON:0035825	45.23	gold quality
upper lobe of left lung	UBERON:0008952	45.01	gold quality
body of uterus	UBERON:0009853	44.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.