LINC01840

Summary

LINC01840 (long intergenic non-protein coding RNA 1840, HGNC:40209) is a long non-coding RNA gene on chromosome 3q27.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40209
Approved symbol	LINC01840
Name	long intergenic non-protein coding RNA 1840
Location	3q27.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230215
Ensembl biotype	lncRNA
Entrez	100874079
RNAcentral	URS00001C777D — lncRNA, 571 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000421870

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421870 — 2 exons

Exon	Start	End
ENSE00001723592	184546714	184547177
ENSE00001796717	184556812	184556918

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 95.97.

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	95.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.64	gold quality
sural nerve	UBERON:0015488	65.27	gold quality
cortical plate	UBERON:0005343	63.95	gold quality
ganglionic eminence	UBERON:0004023	63.14	gold quality
liver	UBERON:0002107	58.60	silver quality
duodenum	UBERON:0002114	58.24	gold quality
testis	UBERON:0000473	57.35	gold quality
prefrontal cortex	UBERON:0000451	55.70	gold quality
muscle tissue	UBERON:0002385	54.95	gold quality
monocyte	CL:0000576	52.71	gold quality
vermiform appendix	UBERON:0001154	52.66	gold quality
bone marrow	UBERON:0002371	52.50	silver quality
blood	UBERON:0000178	51.64	gold quality
calcaneal tendon	UBERON:0003701	51.36	silver quality
right ovary	UBERON:0002118	51.20	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.30	gold quality
islet of Langerhans	UBERON:0000006	49.65	gold quality
superior frontal gyrus	UBERON:0002661	49.36	gold quality
muscle of leg	UBERON:0001383	48.89	silver quality
gastrocnemius	UBERON:0001388	47.95	silver quality
fundus of stomach	UBERON:0001160	47.83	gold quality
frontal cortex	UBERON:0001870	47.61	gold quality
endocervix	UBERON:0000458	47.40	gold quality
cerebellum	UBERON:0002037	47.40	silver quality
cerebellar cortex	UBERON:0002129	47.31	silver quality
right lobe of liver	UBERON:0001114	47.27	silver quality
cerebellar hemisphere	UBERON:0002245	47.15	silver quality
cortex of kidney	UBERON:0001225	47.01	silver quality
rectum	UBERON:0001052	46.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.