LINC01842

Summary

LINC01842 (long intergenic non-protein coding RNA 1842, HGNC:52656) is a long non-coding RNA gene on chromosome 19p13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52656
Approved symbol	LINC01842
Name	long intergenic non-protein coding RNA 1842
Location	19p13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267147
Ensembl biotype	lncRNA
Entrez	101928845
RNAcentral	URS00008C0A78 — lncRNA, 781 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000588275, ENST00000747316

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000588275 — 2 exons

Exon	Start	End
ENSE00004089127	14343426	14344487
ENSE00004089130	14333630	14334019

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 73.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1425 / max 23.5152, expressed in 46 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
174228	0.0902	29
174229	0.0523	18

Top tissues by expression

201 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.85	gold quality
buccal mucosa cell	CL:0002336	66.88	gold quality
myocardium	UBERON:0002349	64.26	gold quality
ventricular zone	UBERON:0003053	62.95	gold quality
ganglionic eminence	UBERON:0004023	60.72	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	58.84	gold quality
rectum	UBERON:0001052	57.41	gold quality
transverse colon	UBERON:0001157	56.44	gold quality
muscle tissue	UBERON:0002385	56.09	gold quality
mucosa of transverse colon	UBERON:0004991	55.92	gold quality
mucosa of sigmoid colon	UBERON:0004993	55.58	gold quality
monocyte	CL:0000576	55.29	gold quality
cartilage tissue	UBERON:0002418	55.19	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	54.47	gold quality
pons	UBERON:0000988	54.21	gold quality
lateral nuclear group of thalamus	UBERON:0002736	54.09	gold quality
large intestine	UBERON:0000059	54.05	gold quality
colonic mucosa	UBERON:0000317	53.94	silver quality
colon	UBERON:0001155	53.90	gold quality
trabecular bone tissue	UBERON:0002483	53.60	gold quality
vastus lateralis	UBERON:0001379	53.48	gold quality
quadriceps femoris	UBERON:0001377	53.45	gold quality
nasal cavity epithelium	UBERON:0005384	53.33	gold quality
smooth muscle tissue	UBERON:0001135	53.25	gold quality
biceps brachii	UBERON:0001507	53.24	gold quality
corpus callosum	UBERON:0002336	52.89	gold quality
lymph node	UBERON:0000029	52.86	gold quality
urethra	UBERON:0000057	52.80	gold quality
esophagus squamous epithelium	UBERON:0006920	52.80	gold quality
oviduct epithelium	UBERON:0004804	52.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.