LINC01843

Summary

LINC01843 (long intergenic non-protein coding RNA 1843, HGNC:52659) is a long non-coding RNA gene on chromosome 5q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52659
Approved symbol	LINC01843
Name	long intergenic non-protein coding RNA 1843
Location	5q31.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	Lnc-APUE
Ensembl gene	ENSG00000251169
Ensembl biotype	lncRNA
Entrez	101927934
RNAcentral	URS000075E43B — lncRNA, 1108 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000515627, ENST00000773353

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515627 — 2 exons

Exon	Start	End
ENSE00004138257	134508406	134509238
ENSE00004138259	134506422	134506834

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 79.79.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6282 / max 18.5635, expressed in 204 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
58581	0.4554	175
58580	0.1150	68
58579	0.0578	36

Top tissues by expression

221 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of transverse colon	UBERON:0004991	79.79	gold quality
rectum	UBERON:0001052	76.00	gold quality
transverse colon	UBERON:0001157	71.50	gold quality
right lobe of liver	UBERON:0001114	68.86	gold quality
islet of Langerhans	UBERON:0000006	66.37	gold quality
duodenum	UBERON:0002114	66.10	gold quality
small intestine Peyer’s patch	UBERON:0003454	64.22	gold quality
small intestine	UBERON:0002108	64.02	gold quality
colonic epithelium	UBERON:0000397	62.63	silver quality
sural nerve	UBERON:0015488	62.12	silver quality
intestine	UBERON:0000160	61.87	gold quality
colon	UBERON:0001155	61.53	gold quality
large intestine	UBERON:0000059	60.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.75	gold quality
liver	UBERON:0002107	58.68	gold quality
adult mammalian kidney	UBERON:0000082	58.40	gold quality
pancreas	UBERON:0001264	57.80	gold quality
vermiform appendix	UBERON:0001154	57.63	gold quality
right adrenal gland	UBERON:0001233	57.57	gold quality
body of stomach	UBERON:0001161	57.50	gold quality
gall bladder	UBERON:0002110	57.49	gold quality
ganglionic eminence	UBERON:0004023	57.32	gold quality
right adrenal gland cortex	UBERON:0035827	55.81	gold quality
stomach	UBERON:0000945	55.72	gold quality
left adrenal gland cortex	UBERON:0035825	54.91	gold quality
left adrenal gland	UBERON:0001234	54.87	gold quality
adrenal gland	UBERON:0002369	54.39	gold quality
adrenal cortex	UBERON:0001235	54.02	gold quality
caecum	UBERON:0001153	53.78	gold quality
omental fat pad	UBERON:0010414	53.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.55

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.