LINC01846

Summary

LINC01846 (long intergenic non-protein coding RNA 1846, HGNC:52661) is a long non-coding RNA gene on chromosome 5q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52661
Approved symbol	LINC01846
Name	long intergenic non-protein coding RNA 1846
Location	5q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248901
Ensembl biotype	lncRNA
Entrez	105379098
RNAcentral	URS0000BC43C4 — lncRNA, 1091 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000505908, ENST00000671389, ENST00000746472, ENST00000746473, ENST00000746474, ENST00000746475

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505908 — 5 exons

Exon	Start	End
ENSE00002045889	98085871	98086284
ENSE00002047677	98160700	98160792
ENSE00002050926	98093400	98093571
ENSE00002051606	98160947	98161352
ENSE00002069986	98160306	98160419

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 96.25.

Top tissues by expression

45 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.25	gold quality
sural nerve	UBERON:0015488	53.51	silver quality
monocyte	CL:0000576	52.97	silver quality
islet of Langerhans	UBERON:0000006	51.60	gold quality
blood	UBERON:0000178	51.36	gold quality
calcaneal tendon	UBERON:0003701	48.20	silver quality
placenta	UBERON:0001987	47.88	gold quality
prefrontal cortex	UBERON:0000451	46.46	gold quality
hindlimb stylopod muscle	UBERON:0004252	45.70	silver quality
tibial artery	UBERON:0007610	44.42	silver quality
gastrocnemius	UBERON:0001388	44.10	silver quality
right testis	UBERON:0004534	42.79	gold quality
thoracic aorta	UBERON:0001515	42.64	gold quality
ascending aorta	UBERON:0001496	42.32	silver quality
stomach	UBERON:0000945	42.24	gold quality
multicellular organism	UBERON:0000468	41.83	gold quality
testis	UBERON:0000473	41.81	gold quality
small intestine Peyer’s patch	UBERON:0003454	41.56	silver quality
left testis	UBERON:0004533	41.42	gold quality
caudate nucleus	UBERON:0001873	41.31	silver quality
heart left ventricle	UBERON:0002084	40.94	silver quality
putamen	UBERON:0001874	40.76	silver quality
skin of leg	UBERON:0001511	40.66	silver quality
body of stomach	UBERON:0001161	40.65	silver quality
left coronary artery	UBERON:0001626	40.40	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	40.29	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.18	silver quality
intestine	UBERON:0000160	40.16	silver quality
colon	UBERON:0001155	40.06	silver quality
transverse colon	UBERON:0001157	39.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.