LINC01848

Summary

LINC01848 (long intergenic non-protein coding RNA 1848, HGNC:52663) is a long non-coding RNA gene on chromosome 5q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52663
Approved symbol	LINC01848
Name	long intergenic non-protein coding RNA 1848
Location	5q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254106
Ensembl biotype	lncRNA
Entrez	100289673
RNAcentral	URS0000ABD806 — lncRNA, 670 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000523446, ENST00000800114, ENST00000800115

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000523446 — 3 exons

Exon	Start	End
ENSE00002120393	109883871	109883970
ENSE00004189291	109884437	109885070
ENSE00004189292	109883177	109883284

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 96.97.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.97	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.25	gold quality
endometrium	UBERON:0001295	58.94	gold quality
prefrontal cortex	UBERON:0000451	58.30	gold quality
monocyte	CL:0000576	57.29	gold quality
gall bladder	UBERON:0002110	55.92	gold quality
islet of Langerhans	UBERON:0000006	55.36	gold quality
lymph node	UBERON:0000029	54.80	gold quality
blood	UBERON:0000178	52.23	gold quality
placenta	UBERON:0001987	51.99	gold quality
right lobe of liver	UBERON:0001114	50.86	gold quality
liver	UBERON:0002107	50.58	gold quality
calcaneal tendon	UBERON:0003701	49.22	silver quality
primary visual cortex	UBERON:0002436	49.21	silver quality
gastrocnemius	UBERON:0001388	48.03	gold quality
adult mammalian kidney	UBERON:0000082	48.00	gold quality
pituitary gland	UBERON:0000007	47.90	gold quality
superior frontal gyrus	UBERON:0002661	47.72	silver quality
amygdala	UBERON:0001876	46.96	gold quality
nucleus accumbens	UBERON:0001882	45.93	silver quality
right adrenal gland	UBERON:0001233	45.78	gold quality
tibial artery	UBERON:0007610	45.48	gold quality
popliteal artery	UBERON:0002250	45.44	gold quality
right atrium auricular region	UBERON:0006631	44.90	gold quality
heart left ventricle	UBERON:0002084	44.74	silver quality
body of pancreas	UBERON:0001150	44.03	silver quality
small intestine	UBERON:0002108	43.76	gold quality
heart	UBERON:0000948	43.73	gold quality
tonsil	UBERON:0002372	43.70	silver quality
left adrenal gland	UBERON:0001234	43.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.