LINC01849

Summary

LINC01849 (long intergenic non-protein coding RNA 1849, HGNC:52665) is a long non-coding RNA gene on chromosome 2q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52665
Approved symbol	LINC01849
Name	long intergenic non-protein coding RNA 1849
Location	2q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234988
Ensembl biotype	lncRNA
Entrez	105373507
RNAcentral	URS0000BC45A9 — lncRNA, 770 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000414647, ENST00000424342, ENST00000656412, ENST00000656514, ENST00000656519, ENST00000691688, ENST00000700776, ENST00000732320, ENST00000732321, ENST00000732322, ENST00000732323, ENST00000732324, ENST00000732325, ENST00000732326, ENST00000732327

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414647 — 2 exons

Exon	Start	End
ENSE00001646139	100609133	100609351
ENSE00001711034	100607028	100607325

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 83.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0201 / max 14.3536, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
21596	0.0201	4

Top tissues by expression

69 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.86	gold quality
right testis	UBERON:0004534	76.03	gold quality
left testis	UBERON:0004533	75.25	gold quality
testis	UBERON:0000473	74.73	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.34	gold quality
gall bladder	UBERON:0002110	55.69	gold quality
nucleus accumbens	UBERON:0001882	55.37	gold quality
prefrontal cortex	UBERON:0000451	54.24	gold quality
multicellular organism	UBERON:0000468	52.91	gold quality
putamen	UBERON:0001874	52.87	gold quality
urinary bladder	UBERON:0001255	52.32	silver quality
caudate nucleus	UBERON:0001873	51.56	gold quality
blood	UBERON:0000178	51.34	silver quality
islet of Langerhans	UBERON:0000006	50.39	gold quality
pancreas	UBERON:0001264	50.31	gold quality
primary visual cortex	UBERON:0002436	49.24	silver quality
pituitary gland	UBERON:0000007	48.94	gold quality
myometrium	UBERON:0001296	48.94	silver quality
gastrocnemius	UBERON:0001388	48.68	gold quality
adenohypophysis	UBERON:0002196	48.30	gold quality
monocyte	CL:0000576	48.24	silver quality
heart left ventricle	UBERON:0002084	48.06	gold quality
brain	UBERON:0000955	48.04	gold quality
frontal cortex	UBERON:0001870	47.72	gold quality
body of pancreas	UBERON:0001150	46.12	silver quality
tibial nerve	UBERON:0001323	46.11	gold quality
cerebral cortex	UBERON:0000956	45.62	gold quality
heart	UBERON:0000948	45.36	gold quality
superior frontal gyrus	UBERON:0002661	45.16	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.