LINC01854

Summary

LINC01854 (long intergenic non-protein coding RNA 1854, HGNC:52670) is a long non-coding RNA gene on chromosome 2q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52670
Approved symbol	LINC01854
Name	long intergenic non-protein coding RNA 1854
Location	2q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000204460
Ensembl biotype	lncRNA
Entrez	151121
RNAcentral	URS000075A998 — lncRNA, 2256 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000375987

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000375987 — 5 exons

Exon	Start	End
ENSE00001469053	129242173	129243650
ENSE00001529126	129244143	129244349
ENSE00001529127	129245153	129245229
ENSE00001529128	129249866	129250074
ENSE00001529129	129273607	129273848

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 85.32.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0648 / max 19.8614, expressed in 22 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
30600	0.0648	22

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
vastus lateralis	UBERON:0001379	85.32	silver quality
quadriceps femoris	UBERON:0001377	85.12	silver quality
muscle of leg	UBERON:0001383	79.56	gold quality
hindlimb stylopod muscle	UBERON:0004252	79.04	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	78.59	silver quality
gastrocnemius	UBERON:0001388	77.62	gold quality
skeletal muscle tissue	UBERON:0001134	75.61	gold quality
deltoid	UBERON:0001476	71.51	silver quality
sperm	CL:0000019	64.24	gold quality
buccal mucosa cell	CL:0002336	62.50	silver quality
ganglionic eminence	UBERON:0004023	59.68	gold quality
left lobe of thyroid gland	UBERON:0001120	59.20	gold quality
tibial nerve	UBERON:0001323	54.01	gold quality
tibial artery	UBERON:0007610	46.84	gold quality
anatomical system	UBERON:0000467	46.61	gold quality
material anatomical entity	UBERON:0000465	46.19	gold quality
multicellular organism	UBERON:0000468	46.16	gold quality
skin of leg	UBERON:0001511	45.50	silver quality
islet of Langerhans	UBERON:0000006	45.37	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	45.16	gold quality
aorta	UBERON:0000947	44.57	gold quality
spinal cord	UBERON:0002240	44.37	gold quality
amniotic fluid	UBERON:0000173	44.27	gold quality
smooth muscle tissue	UBERON:0001135	44.00	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.70	gold quality
anterior cingulate cortex	UBERON:0009835	42.69	silver quality
blood	UBERON:0000178	42.62	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
thyroid gland	UBERON:0002046	42.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.