LINC01856

Summary

LINC01856 (long intergenic non-protein coding RNA 1856, HGNC:52672) is a long non-coding RNA gene on chromosome 2q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52672
Approved symbol	LINC01856
Name	long intergenic non-protein coding RNA 1856
Location	2q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237574
Ensembl biotype	lncRNA
Entrez	101927924
RNAcentral	URS00001C0197 — lncRNA, 2398 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000450840, ENST00000769638, ENST00000769639, ENST00000769640

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450840 — 4 exons

Exon	Start	End
ENSE00001607938	129930729	129930846
ENSE00001654602	129944652	129946703
ENSE00001737308	129933389	129933511
ENSE00001762729	129923177	129923281

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 76.86.

Top tissues by expression

96 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.62	gold quality
ganglionic eminence	UBERON:0004023	55.54	silver quality
skeletal muscle tissue	UBERON:0001134	54.13	gold quality
blood	UBERON:0000178	53.88	silver quality
endometrium	UBERON:0001295	53.69	gold quality
putamen	UBERON:0001874	51.96	gold quality
muscle of leg	UBERON:0001383	51.50	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.46	silver quality
gastrocnemius	UBERON:0001388	51.32	gold quality
myometrium	UBERON:0001296	50.90	gold quality
prefrontal cortex	UBERON:0000451	50.16	gold quality
cerebellar hemisphere	UBERON:0002245	49.50	gold quality
monocyte	CL:0000576	49.41	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.18	gold quality
caudate nucleus	UBERON:0001873	48.79	gold quality
nucleus accumbens	UBERON:0001882	48.76	gold quality
primary visual cortex	UBERON:0002436	48.59	silver quality
gall bladder	UBERON:0002110	48.30	gold quality
Ammon’s horn	UBERON:0001954	47.20	gold quality
brain	UBERON:0000955	46.42	gold quality
islet of Langerhans	UBERON:0000006	46.25	silver quality
right testis	UBERON:0004534	45.92	gold quality
adult mammalian kidney	UBERON:0000082	45.68	gold quality
pancreas	UBERON:0001264	45.51	silver quality
vermiform appendix	UBERON:0001154	45.41	silver quality
multicellular organism	UBERON:0000468	45.09	gold quality
amygdala	UBERON:0001876	45.07	gold quality
kidney	UBERON:0002113	45.04	gold quality
superior frontal gyrus	UBERON:0002661	44.98	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.