LINC01858

Summary

LINC01858 (long intergenic non-protein coding RNA 1858, HGNC:52676) is a long non-coding RNA gene on chromosome 19p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52676
Approved symbol	LINC01858
Name	long intergenic non-protein coding RNA 1858
Location	19p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261615
Ensembl biotype	lncRNA
Entrez	101929144
RNAcentral	URS000075ED48 — lncRNA, 1852 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000564534, ENST00000593985, ENST00000653153, ENST00000654127, ENST00000668302, ENST00000740969, ENST00000838089

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564534 — 8 exons

Exon	Start	End
ENSE00002586551	23056303	23056409
ENSE00002591233	23055482	23055790
ENSE00002592468	23057012	23057220
ENSE00002599228	23054823	23055330
ENSE00002607067	23058465	23058579
ENSE00002609321	23060174	23060318
ENSE00002611769	23061173	23061265
ENSE00002625394	23060647	23060998

Expression profiles

Bgee: expression breadth ubiquitous, 145 present calls, max score 77.31.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	77.31	gold quality
left testis	UBERON:0004533	77.21	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.91	gold quality
buccal mucosa cell	CL:0002336	73.88	gold quality
testis	UBERON:0000473	73.84	gold quality
ganglionic eminence	UBERON:0004023	62.69	gold quality
cortical plate	UBERON:0005343	61.98	gold quality
sural nerve	UBERON:0015488	60.68	silver quality
corpus callosum	UBERON:0002336	59.94	gold quality
mucosa of transverse colon	UBERON:0004991	59.50	gold quality
left ovary	UBERON:0002119	59.20	gold quality
right uterine tube	UBERON:0001302	58.68	gold quality
ventricular zone	UBERON:0003053	58.06	silver quality
calcaneal tendon	UBERON:0003701	57.83	gold quality
gall bladder	UBERON:0002110	57.20	gold quality
monocyte	CL:0000576	55.80	gold quality
right ovary	UBERON:0002118	55.26	gold quality
ovary	UBERON:0000992	55.18	gold quality
ascending aorta	UBERON:0001496	54.98	gold quality
myocardium	UBERON:0002349	54.98	gold quality
lower esophagus mucosa	UBERON:0035834	54.96	gold quality
thoracic aorta	UBERON:0001515	54.80	gold quality
hypothalamus	UBERON:0001898	54.11	gold quality
sperm	CL:0000019	54.00	gold quality
islet of Langerhans	UBERON:0000006	53.90	gold quality
cerebellar vermis	UBERON:0004720	53.86	gold quality
rectum	UBERON:0001052	53.66	gold quality
adrenal tissue	UBERON:0018303	53.29	gold quality
esophagus mucosa	UBERON:0002469	52.89	gold quality
descending thoracic aorta	UBERON:0002345	52.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.