LINC01872

Summary

LINC01872 (long intergenic non-protein coding RNA 1872, HGNC:52691) is a long non-coding RNA gene on chromosome 19q13.41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52691
Approved symbol	LINC01872
Name	long intergenic non-protein coding RNA 1872
Location	19q13.41
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000268318
Ensembl biotype	lncRNA
Entrez	105372444
RNAcentral	URS0000A764BB — lncRNA, 826 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000594261, ENST00000595566, ENST00000600813, ENST00000819842, ENST00000819843, ENST00000819844, ENST00000819845, ENST00000819846

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000594261 — 4 exons

Exon	Start	End
ENSE00003027205	51278754	51278871
ENSE00003115451	51279198	51279300
ENSE00004225174	51271258	51271572
ENSE00004225175	51280834	51281244

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 81.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0151 / max 15.3369, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
177210	0.0110	3
177211	0.0040	3

Top tissues by expression

79 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	81.94	gold quality
testis	UBERON:0000473	81.87	gold quality
right testis	UBERON:0004534	81.08	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.47	gold quality
urinary bladder	UBERON:0001255	61.69	gold quality
multicellular organism	UBERON:0000468	57.24	gold quality
islet of Langerhans	UBERON:0000006	56.81	gold quality
gall bladder	UBERON:0002110	54.20	gold quality
liver	UBERON:0002107	53.81	silver quality
stromal cell of endometrium	CL:0002255	51.79	silver quality
blood	UBERON:0000178	51.37	gold quality
placenta	UBERON:0001987	50.69	gold quality
lymph node	UBERON:0000029	50.37	gold quality
monocyte	CL:0000576	50.21	silver quality
prefrontal cortex	UBERON:0000451	50.17	gold quality
gastrocnemius	UBERON:0001388	48.83	gold quality
fundus of stomach	UBERON:0001160	47.78	gold quality
frontal cortex	UBERON:0001870	47.45	gold quality
cortex of kidney	UBERON:0001225	46.85	silver quality
body of pancreas	UBERON:0001150	46.59	silver quality
adult mammalian kidney	UBERON:0000082	46.29	gold quality
right lobe of liver	UBERON:0001114	46.12	silver quality
lung	UBERON:0002048	45.66	gold quality
cerebellar cortex	UBERON:0002129	45.19	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.55	silver quality
cerebellar hemisphere	UBERON:0002245	44.47	silver quality
thoracic aorta	UBERON:0001515	44.31	gold quality
ascending aorta	UBERON:0001496	44.23	gold quality
tibial artery	UBERON:0007610	44.09	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.