LINC01878

Summary

LINC01878 (long intergenic non-protein coding RNA 1878, HGNC:52697) is a long non-coding RNA gene on chromosome 2q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52697
Approved symbol	LINC01878
Name	long intergenic non-protein coding RNA 1878
Location	2q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234308
Ensembl biotype	lncRNA
Entrez	102725079
RNAcentral	URS00008E3A52 — lncRNA, 413 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000434559, ENST00000453965, ENST00000653871, ENST00000656101, ENST00000659055, ENST00000662471

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434559 — 2 exons

Exon	Start	End
ENSE00001604224	212796011	212796720
ENSE00001786678	212795331	212795389

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 96.78.

Top tissues by expression

92 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	96.78	silver quality
cerebellar vermis	UBERON:0004720	93.26	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.94	gold quality
bone marrow cell	CL:0002092	86.77	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.02	gold quality
right testis	UBERON:0004534	65.86	gold quality
testis	UBERON:0000473	64.15	gold quality
left testis	UBERON:0004533	64.06	gold quality
thymus	UBERON:0002370	63.13	silver quality
calcaneal tendon	UBERON:0003701	63.10	gold quality
bone marrow	UBERON:0002371	62.82	gold quality
tonsil	UBERON:0002372	61.52	silver quality
skeletal muscle tissue	UBERON:0001134	61.48	silver quality
urinary bladder	UBERON:0001255	57.01	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.50	gold quality
monocyte	CL:0000576	55.00	gold quality
blood	UBERON:0000178	54.41	gold quality
muscle of leg	UBERON:0001383	52.60	gold quality
prefrontal cortex	UBERON:0000451	51.93	gold quality
corpus callosum	UBERON:0002336	51.54	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.04	gold quality
multicellular organism	UBERON:0000468	51.00	gold quality
liver	UBERON:0002107	50.85	silver quality
uterine cervix	UBERON:0000002	50.52	silver quality
right lobe of liver	UBERON:0001114	50.05	gold quality
kidney	UBERON:0002113	49.07	silver quality
gastrocnemius	UBERON:0001388	49.01	gold quality
thyroid gland	UBERON:0002046	48.76	gold quality
left lobe of thyroid gland	UBERON:0001120	48.67	gold quality
temporal lobe	UBERON:0001871	48.39	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.