LINC01880

Summary

LINC01880 (long intergenic non-protein coding RNA 1880, HGNC:52699) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52699
Approved symbol	LINC01880
Name	long intergenic non-protein coding RNA 1880
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232002
Ensembl biotype	lncRNA
Entrez	105373979
RNAcentral	URS0000A8E241 — ncRNA, 572 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000446593, ENST00000661866, ENST00000662783, ENST00000824544, ENST00000824545, ENST00000824546, ENST00000824547, ENST00000824548, ENST00000824549, ENST00000824550

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446593 — 4 exons

Exon	Start	End
ENSE00001633409	242047695	242047763
ENSE00001672983	242084096	242084138
ENSE00001680143	242060297	242060519
ENSE00001764788	242048058	242048283

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 90.42.

Top tissues by expression

73 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right atrium auricular region	UBERON:0006631	90.42	gold quality
heart	UBERON:0000948	82.25	gold quality
heart left ventricle	UBERON:0002084	78.95	gold quality
apex of heart	UBERON:0002098	73.93	gold quality
gall bladder	UBERON:0002110	63.94	gold quality
monocyte	CL:0000576	59.80	gold quality
multicellular organism	UBERON:0000468	53.75	gold quality
bone marrow	UBERON:0002371	53.15	silver quality
prefrontal cortex	UBERON:0000451	52.00	gold quality
islet of Langerhans	UBERON:0000006	51.79	gold quality
blood	UBERON:0000178	51.34	gold quality
pancreas	UBERON:0001264	49.90	gold quality
left lobe of thyroid gland	UBERON:0001120	48.48	gold quality
nucleus accumbens	UBERON:0001882	48.39	gold quality
primary visual cortex	UBERON:0002436	48.01	silver quality
placenta	UBERON:0001987	47.97	gold quality
thyroid gland	UBERON:0002046	46.38	gold quality
right lobe of liver	UBERON:0001114	46.08	silver quality
frontal cortex	UBERON:0001870	46.05	gold quality
gastrocnemius	UBERON:0001388	46.00	silver quality
liver	UBERON:0002107	45.84	silver quality
endometrium	UBERON:0001295	45.75	gold quality
brain	UBERON:0000955	44.76	gold quality
caudate nucleus	UBERON:0001873	44.72	gold quality
putamen	UBERON:0001874	44.71	gold quality
myometrium	UBERON:0001296	44.64	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	44.57	gold quality
small intestine Peyer’s patch	UBERON:0003454	44.30	gold quality
cerebral cortex	UBERON:0000956	44.18	gold quality
lymph node	UBERON:0000029	44.10	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.