LINC01881

Summary

LINC01881 (long intergenic non-protein coding RNA 1881, HGNC:52700) is a unprocessed pseudogene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52700
Approved symbol	LINC01881
Name	long intergenic non-protein coding RNA 1881
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000220804
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	728323
RNAcentral	URS00007E4950 — lncRNA, 1494 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000416103

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416103 — 5 exons

Exon	Start	End
ENSE00001741019	242094894	242095027
ENSE00002411826	242116183	242116232
ENSE00003582247	242118965	242119057
ENSE00003616847	242114639	242114741
ENSE00003749929	242130776	242130807

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 86.81.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.8030 / max 100.4753, expressed in 1603 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26612	5.3880	1460
26611	1.4149	755

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.81	gold quality
monocyte	CL:0000576	86.69	gold quality
leukocyte	CL:0000738	86.10	gold quality
calcaneal tendon	UBERON:0003701	85.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.59	gold quality
colonic epithelium	UBERON:0000397	82.20	gold quality
tonsil	UBERON:0002372	81.57	gold quality
granulocyte	CL:0000094	80.80	gold quality
cortical plate	UBERON:0005343	80.69	gold quality
body of pancreas	UBERON:0001150	80.56	gold quality
popliteal artery	UBERON:0002250	80.37	gold quality
tibial artery	UBERON:0007610	80.35	gold quality
pancreas	UBERON:0001264	80.21	gold quality
endometrium	UBERON:0001295	79.48	gold quality
prostate gland	UBERON:0002367	79.34	gold quality
sural nerve	UBERON:0015488	79.26	gold quality
islet of Langerhans	UBERON:0000006	79.08	gold quality
ganglionic eminence	UBERON:0004023	78.94	gold quality
bone marrow cell	CL:0002092	78.93	gold quality
right coronary artery	UBERON:0001625	78.72	gold quality
tibial nerve	UBERON:0001323	78.66	gold quality
bone marrow	UBERON:0002371	78.14	gold quality
descending thoracic aorta	UBERON:0002345	78.03	gold quality
urinary bladder	UBERON:0001255	77.56	gold quality
testis	UBERON:0000473	77.52	gold quality
pituitary gland	UBERON:0000007	77.48	gold quality
rectum	UBERON:0001052	77.36	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	77.35	gold quality
liver	UBERON:0002107	77.32	gold quality
muscle tissue	UBERON:0002385	77.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.50

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.