LINC01882

Summary

LINC01882 (long intergenic non-protein coding RNA 1882, HGNC:52701) is a long non-coding RNA gene on chromosome 18p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52701
Approved symbol	LINC01882
Name	long intergenic non-protein coding RNA 1882
Location	18p11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260302
Ensembl biotype	lncRNA
Entrez	100996324
RNAcentral	URS000075B8C8 — lncRNA, 574 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000563722, ENST00000589930, ENST00000652793, ENST00000657716, ENST00000733297, ENST00000733298, ENST00000733299, ENST00000733300, ENST00000733301, ENST00000733302, ENST00000733303, ENST00000733304, ENST00000733305, ENST00000733306, ENST00000733307, ENST00000733308, ENST00000733309, ENST00000733310, ENST00000733311, ENST00000733312, ENST00000733313, ENST00000733314

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563722 — 1 exons

Exon	Start	End
ENSE00004064525	12774650	12776137

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 92.89.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5484 / max 121.9131, expressed in 134 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
171253	0.5284	132
171252	0.0200	9

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	92.89	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.50	gold quality
granulocyte	CL:0000094	77.45	gold quality
sural nerve	UBERON:0015488	66.32	silver quality
testis	UBERON:0000473	64.85	gold quality
right testis	UBERON:0004534	64.84	gold quality
left testis	UBERON:0004533	64.34	gold quality
blood	UBERON:0000178	64.16	gold quality
bone marrow cell	CL:0002092	63.08	silver quality
bone marrow	UBERON:0002371	63.03	gold quality
ganglionic eminence	UBERON:0004023	62.32	gold quality
lymph node	UBERON:0000029	60.16	gold quality
spleen	UBERON:0002106	58.98	gold quality
leukocyte	CL:0000738	58.88	gold quality
tonsil	UBERON:0002372	57.76	gold quality
fundus of stomach	UBERON:0001160	56.32	gold quality
urinary bladder	UBERON:0001255	56.02	gold quality
duodenum	UBERON:0002114	55.62	gold quality
prefrontal cortex	UBERON:0000451	55.23	gold quality
lower esophagus	UBERON:0013473	54.73	gold quality
lower esophagus muscularis layer	UBERON:0035833	54.69	gold quality
monocyte	CL:0000576	53.43	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.10	gold quality
liver	UBERON:0002107	53.03	gold quality
placenta	UBERON:0001987	52.94	gold quality
lower esophagus mucosa	UBERON:0035834	52.71	gold quality
right lobe of liver	UBERON:0001114	52.49	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	52.14	gold quality
mucosa of transverse colon	UBERON:0004991	51.84	gold quality
gall bladder	UBERON:0002110	51.81	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-HCAD-30	no	56.55
E-ANND-3	no	2.37

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.