LINC01886

Summary

LINC01886 (long intergenic non-protein coding RNA 1886, HGNC:52705) is a long non-coding RNA gene on chromosome 2q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52705
Approved symbol	LINC01886
Name	long intergenic non-protein coding RNA 1886
Location	2q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224568
Ensembl biotype	lncRNA
Entrez	105373537
RNAcentral	URS0000BC455B — lncRNA, 1765 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000439893, ENST00000443205, ENST00000658627, ENST00000660653, ENST00000662038, ENST00000665591, ENST00000666630, ENST00000669483, ENST00000767983, ENST00000767984, ENST00000767985

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439893 — 2 exons

Exon	Start	End
ENSE00001635255	107542749	107542821
ENSE00001757772	107555133	107555639

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 89.98.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0643 / max 25.3116, expressed in 14 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
21840	0.0555	14
202330	0.0088	4

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	89.98	gold quality
thyroid gland	UBERON:0002046	78.64	gold quality
right lobe of thyroid gland	UBERON:0001119	77.29	gold quality
left lobe of thyroid gland	UBERON:0001120	76.98	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.94	gold quality
skeletal muscle tissue	UBERON:0001134	72.98	gold quality
islet of Langerhans	UBERON:0000006	71.89	gold quality
right testis	UBERON:0004534	69.34	gold quality
left testis	UBERON:0004533	68.85	gold quality
testis	UBERON:0000473	68.79	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
muscle of leg	UBERON:0001383	63.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.73	gold quality
thymus	UBERON:0002370	63.26	silver quality
ganglionic eminence	UBERON:0004023	62.98	gold quality
gastrocnemius	UBERON:0001388	62.74	gold quality
pancreas	UBERON:0001264	58.37	gold quality
cortex of kidney	UBERON:0001225	57.77	gold quality
gall bladder	UBERON:0002110	57.34	gold quality
prefrontal cortex	UBERON:0000451	56.71	gold quality
monocyte	CL:0000576	55.81	gold quality
primary visual cortex	UBERON:0002436	55.56	gold quality
lymph node	UBERON:0000029	54.87	gold quality
endometrium	UBERON:0001295	54.68	gold quality
cortical plate	UBERON:0005343	54.03	silver quality
calcaneal tendon	UBERON:0003701	53.94	silver quality
kidney	UBERON:0002113	53.77	gold quality
bone marrow	UBERON:0002371	53.13	silver quality
liver	UBERON:0002107	53.10	silver quality
Ammon’s horn	UBERON:0001954	52.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.