LINC01887

Summary

LINC01887 (long intergenic non-protein coding RNA 1887, HGNC:52706) is a long non-coding RNA gene on chromosome 18p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52706
Approved symbol	LINC01887
Name	long intergenic non-protein coding RNA 1887
Location	18p11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266604
Ensembl biotype	lncRNA
Entrez	102724470
RNAcentral	URS0000BC44E2 — lncRNA, 2244 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000579413, ENST00000583691, ENST00000584734, ENST00000743532, ENST00000743533, ENST00000743534, ENST00000743535, ENST00000743536, ENST00000743537, ENST00000743538, ENST00000743539, ENST00000743540, ENST00000743541, ENST00000743542, ENST00000743543, ENST00000743544, ENST00000743545, ENST00000743546, ENST00000743547, ENST00000743548, ENST00000743549, ENST00000743550, ENST00000743551, ENST00000743552, ENST00000743553, ENST00000743554, ENST00000743555, ENST00000743556, ENST00000743557, ENST00000743558

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000579413 — 2 exons

Exon	Start	End
ENSE00002684466	10628451	10628846
ENSE00002703999	10627646	10627671

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 83.23.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.23	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.07	silver quality
body of pancreas	UBERON:0001150	65.88	gold quality
pancreas	UBERON:0001264	65.06	gold quality
tonsil	UBERON:0002372	64.19	gold quality
lymph node	UBERON:0000029	62.84	gold quality
sural nerve	UBERON:0015488	61.48	silver quality
liver	UBERON:0002107	60.85	gold quality
blood	UBERON:0000178	56.46	gold quality
urinary bladder	UBERON:0001255	55.76	gold quality
monocyte	CL:0000576	54.31	silver quality
vermiform appendix	UBERON:0001154	53.16	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.78	gold quality
primary visual cortex	UBERON:0002436	50.75	gold quality
heart left ventricle	UBERON:0002084	50.37	gold quality
multicellular organism	UBERON:0000468	49.29	gold quality
heart	UBERON:0000948	49.22	gold quality
left testis	UBERON:0004533	48.67	gold quality
testis	UBERON:0000473	48.13	gold quality
right testis	UBERON:0004534	47.95	gold quality
ovary	UBERON:0000992	47.54	gold quality
tibial artery	UBERON:0007610	46.92	gold quality
cortex of kidney	UBERON:0001225	46.88	silver quality
lung	UBERON:0002048	46.42	gold quality
endometrium	UBERON:0001295	45.97	silver quality
spleen	UBERON:0002106	45.71	gold quality
prefrontal cortex	UBERON:0000451	45.66	silver quality
gastrocnemius	UBERON:0001388	45.31	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.76	silver quality
ascending aorta	UBERON:0001496	44.68	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.