LINC01888

Summary

LINC01888 (long intergenic non-protein coding RNA 1888, HGNC:52707) is a long non-coding RNA gene on chromosome 2p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52707
Approved symbol	LINC01888
Name	long intergenic non-protein coding RNA 1888
Location	2p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237576
Ensembl biotype	lncRNA
Entrez	107985893
RNAcentral	URS00026A2518 — lncRNA, 659 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000415138, ENST00000457602, ENST00000655763

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415138 — 2 exons

Exon	Start	End
ENSE00001715790	68837382	68837708
ENSE00001802065	68832044	68832152

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 92.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2375 / max 32.6245, expressed in 69 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
20732	0.1601	52
20735	0.0775	31

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.85	gold quality
quadriceps femoris	UBERON:0001377	81.58	gold quality
skeletal muscle tissue	UBERON:0001134	77.63	silver quality
colonic epithelium	UBERON:0000397	77.02	gold quality
cerebellar vermis	UBERON:0004720	75.71	gold quality
granulocyte	CL:0000094	73.22	gold quality
thymus	UBERON:0002370	72.38	silver quality
leukocyte	CL:0000738	70.11	gold quality
monocyte	CL:0000576	69.96	gold quality
bone marrow cell	CL:0002092	68.74	silver quality
blood	UBERON:0000178	68.43	gold quality
bone marrow	UBERON:0002371	65.88	gold quality
left testis	UBERON:0004533	63.82	gold quality
testis	UBERON:0000473	63.51	gold quality
right testis	UBERON:0004534	62.98	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.86	gold quality
calcaneal tendon	UBERON:0003701	58.72	gold quality
lymph node	UBERON:0000029	56.83	gold quality
placenta	UBERON:0001987	56.38	gold quality
islet of Langerhans	UBERON:0000006	56.02	gold quality
kidney	UBERON:0002113	55.26	silver quality
prefrontal cortex	UBERON:0000451	54.75	gold quality
gall bladder	UBERON:0002110	54.48	gold quality
multicellular organism	UBERON:0000468	54.45	gold quality
spleen	UBERON:0002106	52.56	gold quality
cortex of kidney	UBERON:0001225	52.45	silver quality
liver	UBERON:0002107	51.92	gold quality
vermiform appendix	UBERON:0001154	51.51	gold quality
pancreas	UBERON:0001264	51.19	gold quality
muscle of leg	UBERON:0001383	50.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.