LINC01890

Summary

LINC01890 (long intergenic non-protein coding RNA 1890, HGNC:52709) is a long non-coding RNA gene on chromosome 2p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52709
Approved symbol	LINC01890
Name	long intergenic non-protein coding RNA 1890
Location	2p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228329
Ensembl biotype	lncRNA
Entrez	105374791
RNAcentral	URS0000EF107E — lncRNA, 1310 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000415448, ENST00000652076, ENST00000653356, ENST00000654212, ENST00000654239, ENST00000655209, ENST00000657362, ENST00000773357, ENST00000773358

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415448 — 2 exons

Exon	Start	End
ENSE00001687393	68832816	68833050
ENSE00001795424	68836411	68837192

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 86.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0690 / max 24.3586, expressed in 18 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
28889	0.0690	18

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.85	gold quality
left testis	UBERON:0004533	77.39	gold quality
right testis	UBERON:0004534	77.38	gold quality
testis	UBERON:0000473	77.25	gold quality
bone marrow cell	CL:0002092	73.72	silver quality
granulocyte	CL:0000094	72.01	gold quality
monocyte	CL:0000576	68.13	gold quality
leukocyte	CL:0000738	68.05	gold quality
bone marrow	UBERON:0002371	64.16	gold quality
blood	UBERON:0000178	63.95	gold quality
multicellular organism	UBERON:0000468	55.34	gold quality
skeletal muscle tissue	UBERON:0001134	53.27	silver quality
vermiform appendix	UBERON:0001154	51.70	gold quality
lymph node	UBERON:0000029	51.67	gold quality
descending thoracic aorta	UBERON:0002345	50.72	gold quality
calcaneal tendon	UBERON:0003701	50.21	silver quality
liver	UBERON:0002107	50.15	silver quality
duodenum	UBERON:0002114	49.62	gold quality
spleen	UBERON:0002106	49.37	gold quality
prefrontal cortex	UBERON:0000451	48.54	silver quality
muscle of leg	UBERON:0001383	48.19	gold quality
islet of Langerhans	UBERON:0000006	47.91	silver quality
smooth muscle tissue	UBERON:0001135	47.56	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.23	gold quality
adrenal tissue	UBERON:0018303	46.86	silver quality
right lobe of liver	UBERON:0001114	46.74	silver quality
endometrium	UBERON:0001295	46.43	gold quality
gall bladder	UBERON:0002110	46.43	gold quality
gastrocnemius	UBERON:0001388	46.08	gold quality
heart left ventricle	UBERON:0002084	44.88	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.