LINC01891

Summary

LINC01891 (long intergenic non-protein coding RNA 1891, HGNC:52710) is a long non-coding RNA gene on chromosome 2q37.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52710
Approved symbol	LINC01891
Name	long intergenic non-protein coding RNA 1891
Location	2q37.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231682
Ensembl biotype	lncRNA
Entrez	105373934
RNAcentral	URS00004ABA8F — lncRNA, 538 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000439798, ENST00000821745, ENST00000821746, ENST00000821747, ENST00000821748, ENST00000821749, ENST00000821750, ENST00000821751, ENST00000821752

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439798 — 3 exons

Exon	Start	End
ENSE00001602508	234454485	234454595
ENSE00001700501	234450118	234450398
ENSE00001729777	234444590	234444735

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 93.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.8405 / max 379.3485, expressed in 96 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34632	1.1858	85
34631	0.4694	69
34633	0.1854	47

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.88	silver quality
lymph node	UBERON:0000029	78.34	gold quality
vermiform appendix	UBERON:0001154	72.94	gold quality
tonsil	UBERON:0002372	68.57	gold quality
bone marrow cell	CL:0002092	68.42	silver quality
blood	UBERON:0000178	65.37	gold quality
urinary bladder	UBERON:0001255	62.37	gold quality
calcaneal tendon	UBERON:0003701	61.46	gold quality
endometrium	UBERON:0001295	60.84	gold quality
colonic epithelium	UBERON:0000397	60.70	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.86	gold quality
granulocyte	CL:0000094	58.73	gold quality
bone marrow	UBERON:0002371	57.51	gold quality
gall bladder	UBERON:0002110	56.11	gold quality
placenta	UBERON:0001987	56.10	gold quality
cortex of kidney	UBERON:0001225	54.74	gold quality
islet of Langerhans	UBERON:0000006	54.53	gold quality
pancreas	UBERON:0001264	54.09	gold quality
leukocyte	CL:0000738	53.87	gold quality
saliva-secreting gland	UBERON:0001044	53.31	gold quality
liver	UBERON:0002107	53.29	gold quality
minor salivary gland	UBERON:0001830	53.16	gold quality
small intestine	UBERON:0002108	52.90	gold quality
small intestine Peyer’s patch	UBERON:0003454	52.74	gold quality
multicellular organism	UBERON:0000468	52.73	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.68	gold quality
primary visual cortex	UBERON:0002436	51.44	gold quality
spleen	UBERON:0002106	51.43	gold quality
rectum	UBERON:0001052	51.42	gold quality
monocyte	CL:0000576	51.30	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.01

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.