LINC01895

Summary

LINC01895 (long intergenic non-protein coding RNA 1895, HGNC:52714) is a long non-coding RNA gene on chromosome 18p11.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52714
Approved symbol	LINC01895
Name	long intergenic non-protein coding RNA 1895
Location	18p11.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259256
Ensembl biotype	lncRNA
Entrez	105371964
RNAcentral	URS0000BC445E — lncRNA, 481 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000558690, ENST00000653644, ENST00000662880, ENST00000664193, ENST00000664706, ENST00000665521, ENST00000665752, ENST00000667064, ENST00000667334, ENST00000667379, ENST00000669368, ENST00000669439, ENST00000669526, ENST00000671295, ENST00000671376, ENST00000779668, ENST00000779669, ENST00000779670, ENST00000779671, ENST00000779672, ENST00000779673, ENST00000779674

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558690 — 3 exons

Exon	Start	End
ENSE00002544859	3348133	3348250
ENSE00004150342	3350487	3350635
ENSE00004150343	3347688	3347988

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 95.68.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2692 / max 51.8957, expressed in 63 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
171018	0.2692	63

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	95.68	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.55	gold quality
ganglionic eminence	UBERON:0004023	64.25	gold quality
sural nerve	UBERON:0015488	64.17	gold quality
urinary bladder	UBERON:0001255	62.65	gold quality
bone marrow	UBERON:0002371	58.07	gold quality
left testis	UBERON:0004533	56.55	gold quality
testis	UBERON:0000473	56.51	gold quality
myometrium	UBERON:0001296	55.83	gold quality
right testis	UBERON:0004534	55.46	gold quality
leukocyte	CL:0000738	55.05	gold quality
monocyte	CL:0000576	54.36	gold quality
placenta	UBERON:0001987	53.44	gold quality
liver	UBERON:0002107	53.32	silver quality
lymph node	UBERON:0000029	52.78	gold quality
superior frontal gyrus	UBERON:0002661	51.32	gold quality
blood	UBERON:0000178	49.88	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.74	gold quality
tibial nerve	UBERON:0001323	49.57	gold quality
tonsil	UBERON:0002372	47.83	gold quality
primary visual cortex	UBERON:0002436	47.81	silver quality
gastrocnemius	UBERON:0001388	47.80	gold quality
ectocervix	UBERON:0012249	47.44	gold quality
gall bladder	UBERON:0002110	47.07	gold quality
multicellular organism	UBERON:0000468	46.94	gold quality
ovary	UBERON:0000992	46.76	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	46.66	gold quality
right lobe of liver	UBERON:0001114	46.08	silver quality
heart left ventricle	UBERON:0002084	45.99	gold quality
esophagus mucosa	UBERON:0002469	45.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.