LINC01896

Summary

LINC01896 (long intergenic non-protein coding RNA 1896, HGNC:52715) is a long non-coding RNA gene on chromosome 18q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52715
Approved symbol	LINC01896
Name	long intergenic non-protein coding RNA 1896
Location	18q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000263146
Ensembl biotype	lncRNA
Entrez	645321
RNAcentral	URS00026A1C44 — lncRNA, 1801 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000572007, ENST00000573860, ENST00000575722, ENST00000583511, ENST00000824724, ENST00000824725, ENST00000824726, ENST00000824727, ENST00000824728

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000572007 — 2 exons

Exon	Start	End
ENSE00004234258	78976814	78977429
ENSE00004234259	78977555	78978011

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 96.53.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.4883 / max 21.9541, expressed in 148 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
172634	0.4079	131
172633	0.0804	37

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	96.53	gold quality
putamen	UBERON:0001874	95.58	gold quality
caudate nucleus	UBERON:0001873	95.31	gold quality
ventricular zone	UBERON:0003053	95.22	gold quality
amygdala	UBERON:0001876	95.16	gold quality
temporal lobe	UBERON:0001871	95.07	gold quality
nucleus accumbens	UBERON:0001882	94.95	gold quality
substantia nigra	UBERON:0002038	94.51	gold quality
Ammon’s horn	UBERON:0001954	92.84	gold quality
hypothalamus	UBERON:0001898	92.77	gold quality
anterior cingulate cortex	UBERON:0009835	92.73	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	91.38	gold quality
Brodmann (1909) area 9	UBERON:0013540	91.30	gold quality
right frontal lobe	UBERON:0002810	90.88	gold quality
cerebral cortex	UBERON:0000956	90.56	gold quality
ganglionic eminence	UBERON:0004023	89.07	gold quality
frontal cortex	UBERON:0001870	88.82	gold quality
primary visual cortex	UBERON:0002436	88.55	gold quality
prefrontal cortex	UBERON:0000451	87.55	gold quality
superior frontal gyrus	UBERON:0002661	85.94	gold quality
brain	UBERON:0000955	85.68	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.59	gold quality
vagina	UBERON:0000996	84.59	gold quality
corpus callosum	UBERON:0002336	82.43	gold quality
prostate gland	UBERON:0002367	81.71	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.02	gold quality
adult mammalian kidney	UBERON:0000082	79.37	gold quality
left testis	UBERON:0004533	76.70	gold quality
kidney	UBERON:0002113	76.24	gold quality
testis	UBERON:0000473	75.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.