LINC01898

Summary

LINC01898 (long intergenic non-protein coding RNA 1898, HGNC:52717) is a long non-coding RNA gene on chromosome 18q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52717
Approved symbol	LINC01898
Name	long intergenic non-protein coding RNA 1898
Location	18q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261194
Ensembl biotype	lncRNA
Entrez	100505853
RNAcentral	URS0000A76CC3 — lncRNA, 1917 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000564156, ENST00000662237, ENST00000662762

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564156 — 2 exons

Exon	Start	End
ENSE00002586363	75712016	75712385
ENSE00002607951	75696079	75697611

Expression profiles

Bgee: expression breadth broad, 14 present calls, max score 81.68.

Top tissues by expression

176 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.68	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.23	gold quality
sperm	CL:0000019	58.20	gold quality
parotid gland	UBERON:0001831	56.53	gold quality
monocyte	CL:0000576	55.52	gold quality
jejunal mucosa	UBERON:0000399	53.81	gold quality
right testis	UBERON:0004534	53.00	gold quality
testis	UBERON:0000473	52.37	gold quality
left testis	UBERON:0004533	51.86	gold quality
saliva-secreting gland	UBERON:0001044	51.81	gold quality
oocyte	CL:0000023	49.89	gold quality
lateral globus pallidus	UBERON:0002476	48.32	gold quality
buccal mucosa cell	CL:0002336	48.09	silver quality
jejunum	UBERON:0002115	47.58	gold quality
small intestine	UBERON:0002108	43.53	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	43.05	silver quality
gingiva	UBERON:0001828	43.03	gold quality
heart left ventricle	UBERON:0002084	42.90	gold quality
amniotic fluid	UBERON:0000173	42.83	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
placenta	UBERON:0001987	42.51	gold quality
biceps brachii	UBERON:0001507	42.48	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	42.23	gold quality
skin of hip	UBERON:0001554	42.10	silver quality
anatomical system	UBERON:0000467	42.08	gold quality
material anatomical entity	UBERON:0000465	42.00	gold quality
multicellular organism	UBERON:0000468	41.95	gold quality
prefrontal cortex	UBERON:0000451	41.94	gold quality
seminal vesicle	UBERON:0000998	41.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.