LINC01899

Summary

LINC01899 (long intergenic non-protein coding RNA 1899, HGNC:52718) is a long non-coding RNA gene on chromosome 18q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52718
Approved symbol	LINC01899
Name	long intergenic non-protein coding RNA 1899
Location	18q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000265352
Ensembl biotype	lncRNA
Entrez	102724913
RNAcentral	URS00007D0A17 — lncRNA, 575 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000580323, ENST00000583756, ENST00000584810, ENST00000764766, ENST00000764767, ENST00000764768, ENST00000764769, ENST00000764770, ENST00000764771, ENST00000764772, ENST00000764773

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000580323 — 4 exons

Exon	Start	End
ENSE00002713229	71779556	71779800
ENSE00004121983	71781933	71782275
ENSE00004121984	71786981	71787075
ENSE00004121987	71788112	71788174

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 83.86.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.86	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.78	gold quality
left testis	UBERON:0004533	69.51	gold quality
testis	UBERON:0000473	69.05	gold quality
right testis	UBERON:0004534	67.72	gold quality
gastrocnemius	UBERON:0001388	64.31	gold quality
cortex of kidney	UBERON:0001225	60.62	gold quality
monocyte	CL:0000576	59.44	gold quality
gall bladder	UBERON:0002110	59.34	gold quality
multicellular organism	UBERON:0000468	54.43	gold quality
prefrontal cortex	UBERON:0000451	54.20	gold quality
heart left ventricle	UBERON:0002084	54.16	gold quality
adrenal tissue	UBERON:0018303	53.94	gold quality
blood	UBERON:0000178	53.65	gold quality
right atrium auricular region	UBERON:0006631	53.39	gold quality
right lobe of liver	UBERON:0001114	52.95	gold quality
endometrium	UBERON:0001295	52.46	silver quality
amygdala	UBERON:0001876	52.38	gold quality
fallopian tube	UBERON:0003889	51.97	gold quality
superior frontal gyrus	UBERON:0002661	50.74	gold quality
tibial artery	UBERON:0007610	49.87	gold quality
body of stomach	UBERON:0001161	49.49	gold quality
caudate nucleus	UBERON:0001873	49.32	gold quality
mucosa of transverse colon	UBERON:0004991	49.29	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	49.27	gold quality
subcutaneous adipose tissue	UBERON:0002190	48.77	gold quality
frontal cortex	UBERON:0001870	48.40	gold quality
corpus callosum	UBERON:0002336	48.20	silver quality
stomach	UBERON:0000945	48.18	gold quality
prostate gland	UBERON:0002367	48.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.